Wall clock time and date at job start Mon Mar 30 2020 02:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99647 * 2 1 4 4 H 1.48506 * 109.47226 * 270.00090 * 3 2 1 5 5 H 1.48495 * 109.47178 * 30.00020 * 3 2 1 6 6 H 1.48501 * 109.46990 * 150.00414 * 3 2 1 7 7 C 1.38810 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00277 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99987 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00163 * 179.97438 * 9 7 2 11 11 H 1.08990 * 112.88134 * 336.34393 * 10 9 7 12 12 C 1.53954 * 113.74258 * 107.76672 * 10 9 7 13 13 C 1.53949 * 87.29765 * 89.75349 * 12 10 9 14 14 H 1.09006 * 113.65852 * 270.26107 * 13 12 10 15 15 O 1.42891 * 113.66576 * 139.19964 * 13 12 10 16 16 C 1.52905 * 113.66427 * 204.99179 * 10 9 7 17 17 C 1.52917 * 121.13340 * 36.05518 * 16 10 9 18 18 C 1.53957 * 86.77928 * 150.61497 * 17 16 10 19 19 C 1.52909 * 121.13655 * 144.61414 * 16 10 9 20 20 H 0.96993 * 119.99922 * 359.97438 * 1 2 3 21 21 H 0.96998 * 120.00200 * 359.97438 * 9 7 2 22 22 H 1.09009 * 113.57655 * 204.35380 * 12 10 9 23 23 H 1.09000 * 113.58141 * 335.06509 * 12 10 9 24 24 H 0.96706 * 113.99935 * 82.81111 * 15 13 12 25 25 H 1.08997 * 113.66031 * 265.08631 * 17 16 10 26 26 H 1.09002 * 113.66187 * 36.15037 * 17 16 10 27 27 H 1.09001 * 113.57949 * 89.86751 * 18 17 16 28 28 H 1.08996 * 113.58143 * 220.66411 * 18 17 16 29 29 H 1.09001 * 113.66026 * 323.85782 * 19 16 10 30 30 H 1.08998 * 113.66179 * 94.82069 * 19 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 1 3.5275 -3.2978 0.4025 12 6 4.7951 -2.7923 -1.3418 13 6 6.0286 -2.0393 -0.8112 14 1 6.0227 -0.9737 -1.0406 15 8 7.2689 -2.6717 -1.1329 16 6 5.5182 -2.3677 0.5922 17 6 5.8116 -1.4455 1.7762 18 6 6.9187 -2.4418 2.1661 19 6 6.1202 -3.5151 1.4042 20 1 -0.4850 0.8400 0.0004 21 1 3.8647 -0.3621 0.0004 22 1 4.9684 -3.8570 -1.4988 23 1 4.3231 -2.3100 -2.1979 24 1 7.5963 -2.4674 -2.0196 25 1 6.1883 -0.4652 1.4842 26 1 4.9983 -1.3902 2.4998 27 1 7.8859 -2.2169 1.7166 28 1 6.9823 -2.6252 3.2387 29 1 5.3935 -4.0413 2.0231 30 1 6.7420 -4.1889 0.8148 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595777004.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:21 Heat of formation + Delta-G solvation = 6.811447 kcal Electronic energy + Delta-G solvation = -12964.111515 eV Core-core repulsion = 10761.224391 eV Total energy + Delta-G solvation = -2202.887124 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.21683 -35.77194 -34.87425 -32.52130 -30.21614 -25.43620 -24.52358 -24.03330 -22.40236 -20.12276 -18.19098 -17.29343 -16.92121 -15.21574 -15.19049 -14.55733 -13.79528 -13.54216 -12.80623 -12.50790 -12.17891 -11.97391 -11.63278 -11.56305 -11.02521 -10.91021 -10.85363 -10.25728 -10.12391 -9.92802 -9.64077 -9.58764 -9.09042 -8.86439 -7.29980 -5.80931 -3.16872 3.34030 3.37012 3.42197 4.40159 4.55069 4.81022 4.93312 5.05473 5.15486 5.28401 5.36706 5.58901 5.67475 5.81141 5.89459 6.00637 6.13725 6.25736 6.31248 6.35147 6.45130 6.58242 6.74236 6.78029 6.97861 7.88007 7.97772 8.38821 9.16492 9.88787 10.08544 11.37196 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044485 B = 0.011175 C = 0.010814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.273938 B = 2504.930938 C = 2588.613214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.881 3.119 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.246 4.246 8 H 0.092 0.908 9 N -0.727 5.727 10 C 0.187 3.813 11 H 0.076 0.924 12 C -0.198 4.198 13 C 0.101 3.899 14 H 0.075 0.925 15 O -0.562 6.562 16 C -0.111 4.111 17 C -0.121 4.121 18 C -0.137 4.137 19 C -0.104 4.104 20 H 0.260 0.740 21 H 0.362 0.638 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.370 0.630 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.642 -3.959 0.210 14.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.711 3.289 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.375 4.375 8 H 0.110 0.890 9 N -0.366 5.366 10 C 0.075 3.925 11 H 0.094 0.906 12 C -0.239 4.239 13 C 0.043 3.957 14 H 0.093 0.907 15 O -0.367 6.367 16 C -0.113 4.113 17 C -0.159 4.159 18 C -0.175 4.175 19 C -0.142 4.142 20 H 0.070 0.930 21 H 0.195 0.805 22 H 0.096 0.904 23 H 0.088 0.912 24 H 0.216 0.784 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.267 -4.229 0.837 13.950 hybrid contribution 0.587 1.573 -0.700 1.819 sum 13.855 -2.656 0.137 14.107 Atomic orbital electron populations 1.69694 1.05072 1.25881 1.57261 1.24659 0.95224 0.97138 1.01896 0.86602 0.79363 0.85118 0.77839 1.21048 1.21587 1.20203 1.19114 0.80328 0.94855 1.43241 0.88994 1.42445 1.03872 1.01511 1.88793 1.20737 0.89250 0.90011 0.92506 0.90616 1.24422 0.97728 1.00129 1.01619 1.23062 0.82213 0.95176 0.95296 0.90736 1.86477 1.39508 1.73701 1.36990 1.23208 0.97571 0.98242 0.92282 1.22637 0.98349 0.96952 0.97932 1.22816 0.97967 0.97451 0.99260 1.22391 0.98637 0.95671 0.97463 0.92981 0.80501 0.90357 0.91186 0.78424 0.92306 0.89436 0.90573 0.92200 0.90230 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.12 13.97 55.49 0.78 -28.34 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 21.96 27.74 -169.99 -4.71 17.24 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 7 C -0.25 -6.89 10.45 -15.06 -0.16 -7.05 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 N -0.73 -17.14 4.90 -52.99 -0.26 -17.40 16 10 C 0.19 3.69 4.36 -67.48 -0.29 3.40 16 11 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 12 C -0.20 -3.42 7.72 -25.75 -0.20 -3.62 16 13 C 0.10 1.62 5.01 -26.28 -0.13 1.49 16 14 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 15 O -0.56 -7.96 12.86 -35.23 -0.45 -8.41 16 16 C -0.11 -1.87 0.92 -154.71 -0.14 -2.02 16 17 C -0.12 -1.99 7.49 -26.28 -0.20 -2.18 16 18 C -0.14 -1.94 8.08 -25.75 -0.21 -2.15 16 19 C -0.10 -1.55 7.55 -26.28 -0.20 -1.74 16 20 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 21 H 0.36 8.42 5.67 -40.82 -0.23 8.19 16 22 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 23 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 24 H 0.37 3.64 9.12 45.56 0.42 4.05 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 1.05 7.65 -51.93 -0.40 0.65 16 LS Contribution 249.33 15.07 3.76 3.76 Total: -1.00 -30.91 249.33 -6.13 -37.03 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -3.61 Total: 9.90 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -1.62 Total: -13.78 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.52 Total: -45.75 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -0.45 Total: -8.41 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.24 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.91 -6.13 -37.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595777004.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.844 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds