Wall clock time and date at job start Mon Mar 30 2020 02:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00052 * 2 1 4 4 H 1.48504 * 109.46996 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47106 * 299.99666 * 3 2 1 6 6 H 1.48496 * 109.47342 * 59.99821 * 3 2 1 7 7 C 1.38818 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00416 * 193.17664 * 7 2 1 9 9 N 1.36941 * 119.99440 * 13.18177 * 7 2 1 10 10 C 1.45729 * 117.68566 * 24.65186 * 9 7 2 11 11 C 1.53191 * 108.56842 * 152.37634 * 10 9 7 12 12 C 1.52818 * 108.14076 * 59.68219 * 11 10 9 13 13 H 1.08999 * 110.84086 * 60.29345 * 12 11 10 14 14 C 1.54256 * 108.69021 * 183.08739 * 12 11 10 15 15 O 1.43030 * 107.82783 * 101.41566 * 14 12 11 16 16 C 1.43193 * 110.54533 * 359.25976 * 15 14 12 17 17 C 1.52865 * 111.07158 * 296.54247 * 12 11 10 18 18 H 1.08997 * 108.21784 * 154.83195 * 17 12 11 19 19 C 1.44073 * 117.68034 * 204.63882 * 9 7 2 20 20 H 0.97002 * 120.00106 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.62141 * 272.09640 * 10 9 7 22 22 H 1.08993 * 109.61998 * 32.47043 * 10 9 7 23 23 H 1.08998 * 109.72616 * 179.34525 * 11 10 9 24 24 H 1.09000 * 109.72294 * 300.02068 * 11 10 9 25 25 H 1.09004 * 109.79413 * 341.82786 * 14 12 11 26 26 H 1.09005 * 109.79210 * 220.99893 * 14 12 11 27 27 H 1.08997 * 110.06308 * 137.32782 * 16 15 14 28 28 H 1.08996 * 110.05675 * 258.78413 * 16 15 14 29 29 H 1.08994 * 107.78810 * 54.64210 * 19 9 7 30 30 H 1.09000 * 107.78108 * 298.82979 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0689 -1.2144 0.2137 9 7 1.3526 -2.3726 -0.2694 10 6 0.1314 -2.2960 -1.0609 11 6 -0.0487 -3.6204 -1.8094 12 6 -0.1404 -4.7424 -0.7759 13 1 -0.9896 -4.5879 -0.1102 14 6 -0.2438 -6.0908 -1.5179 15 8 1.0465 -6.7073 -1.4876 16 6 1.9872 -5.8707 -0.8052 17 6 1.1597 -4.8654 0.0187 18 1 0.9278 -5.3149 0.9842 19 6 1.9172 -3.5925 0.2491 20 1 -0.4850 0.8401 -0.0004 21 1 -0.7214 -2.1286 -0.4030 22 1 0.2091 -1.4764 -1.7752 23 1 -0.9645 -3.5879 -2.3996 24 1 0.8058 -3.7921 -2.4640 25 1 -0.5476 -5.9213 -2.5509 26 1 -0.9708 -6.7318 -1.0192 27 1 2.6113 -6.4719 -0.1440 28 1 2.6092 -5.3415 -1.5270 29 1 2.0433 -3.4702 1.3247 30 1 2.9091 -3.7117 -0.1867 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595831304.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:43 Heat of formation + Delta-G solvation = -47.295964 kcal Electronic energy + Delta-G solvation = -13188.152002 eV Core-core repulsion = 10982.918604 eV Total energy + Delta-G solvation = -2205.233397 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.19138 -37.98233 -34.74607 -33.18595 -32.10003 -29.27724 -27.02068 -24.71180 -23.48676 -22.97912 -19.67281 -18.98140 -17.44093 -16.93499 -16.62162 -15.92684 -15.57049 -15.53118 -14.79114 -14.11292 -14.00654 -13.77629 -13.15275 -12.94904 -12.85620 -12.45899 -12.24026 -12.06301 -11.72217 -11.59967 -11.29991 -11.22406 -10.54451 -10.37850 -8.71650 -7.85100 -5.38206 1.44391 1.45599 1.56680 2.47977 2.93771 3.24342 3.44827 3.72174 3.77116 3.98176 4.07610 4.32345 4.44280 4.64733 4.67631 4.74255 4.81905 4.91741 4.97698 5.03953 5.10454 5.21492 5.30101 5.42802 5.64775 5.84870 6.07806 6.35788 7.17065 7.95980 8.24005 9.15294 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.072716 B = 0.010225 C = 0.009464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.967034 B = 2737.700179 C = 2957.866806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.278 4.278 8 H 0.066 0.934 9 N -0.612 5.612 10 C 0.200 3.800 11 C -0.123 4.123 12 C -0.107 4.107 13 H 0.087 0.913 14 C 0.062 3.938 15 O -0.400 6.400 16 C 0.068 3.932 17 C -0.118 4.118 18 H 0.086 0.914 19 C 0.173 3.827 20 H 0.250 0.750 21 H 0.012 0.988 22 H 0.020 0.980 23 H 0.080 0.920 24 H 0.052 0.948 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.053 0.947 29 H 0.007 0.993 30 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.230 -9.812 -2.119 10.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.799 3.201 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.409 4.409 8 H 0.084 0.916 9 N -0.337 5.337 10 C 0.075 3.925 11 C -0.161 4.161 12 C -0.126 4.126 13 H 0.106 0.894 14 C -0.014 4.014 15 O -0.320 6.320 16 C -0.008 4.008 17 C -0.137 4.137 18 H 0.104 0.896 19 C 0.047 3.953 20 H 0.059 0.941 21 H 0.030 0.970 22 H 0.038 0.962 23 H 0.099 0.901 24 H 0.071 0.929 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.119 0.881 28 H 0.071 0.929 29 H 0.025 0.975 30 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 0.175 -9.946 -2.203 10.189 hybrid contribution 0.250 1.525 0.311 1.576 sum 0.425 -8.421 -1.893 8.642 Atomic orbital electron populations 1.70249 1.06494 1.25675 1.55691 1.25838 0.96265 1.01483 1.00802 0.85152 0.78485 0.79555 0.76928 1.19172 1.21479 1.21623 1.19594 0.92195 0.85846 1.43226 0.91640 1.43415 1.27895 1.02481 1.59908 1.20253 0.87473 0.93064 0.91748 1.22030 1.01478 0.95246 0.97365 1.22064 0.97815 0.95514 0.97162 0.89437 1.23296 0.85297 0.92053 1.00788 1.88136 1.20209 1.45187 1.78472 1.23298 0.91622 0.91472 0.94429 1.21696 0.95658 0.95708 1.00633 0.89564 1.19367 0.94957 0.85371 0.95557 0.94069 0.97019 0.96171 0.90127 0.92920 0.90402 0.89608 0.88140 0.92863 0.97543 0.96627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.65 10.60 21.65 0.23 -55.42 16 2 C -0.05 -2.75 4.98 84.86 0.42 -2.33 16 3 Si 0.97 45.45 29.57 68.60 2.03 47.47 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 7 C -0.28 -15.76 9.47 84.03 0.80 -14.96 16 8 H 0.07 3.63 7.86 -2.91 -0.02 3.61 16 9 N -0.61 -31.67 3.20 -715.45 -2.29 -33.96 16 10 C 0.20 9.89 4.66 86.59 0.40 10.29 16 11 C -0.12 -4.59 5.01 30.60 0.15 -4.44 16 12 C -0.11 -3.47 3.09 -10.47 -0.03 -3.50 16 13 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 14 C 0.06 1.66 7.40 72.41 0.54 2.19 16 15 O -0.40 -12.10 11.30 -148.98 -1.68 -13.78 16 16 C 0.07 2.01 7.10 72.35 0.51 2.52 16 17 C -0.12 -3.97 2.96 -11.47 -0.03 -4.00 16 18 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 19 C 0.17 7.37 5.74 85.84 0.49 7.87 16 20 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 21 H 0.01 0.65 7.32 -2.39 -0.02 0.63 16 22 H 0.02 1.11 7.09 -2.39 -0.02 1.09 16 23 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 24 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.08 1.94 7.69 -2.39 -0.02 1.92 16 26 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.05 1.66 7.69 -2.39 -0.02 1.64 16 29 H 0.01 0.29 8.13 -2.39 -0.02 0.27 16 30 H 0.02 0.66 7.29 -2.39 -0.02 0.64 16 Total: -1.00 -63.54 236.65 2.64 -60.91 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: 1.10 Total: 1.14 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 3.25 Total: -6.36 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -2.06 Total: -89.37 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -1.68 Total: -13.78 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -63.54 2.64 -60.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595831304.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.609 kcal (2) G-P(sol) polarization free energy of solvation -63.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds