Wall clock time and date at job start Mon Mar 30 2020 02:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99828 * 2 1 4 4 H 1.48492 * 109.47391 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47316 * 300.00479 * 3 2 1 6 6 H 1.48503 * 109.46735 * 60.00610 * 3 2 1 7 7 C 1.38810 * 120.00420 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00522 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99801 * 359.97438 * 7 2 1 10 10 C 1.47365 * 125.61847 * 0.02562 * 9 7 2 11 11 C 1.56843 * 105.03628 * 154.28088 * 10 9 7 12 12 C 1.54877 * 101.12084 * 36.57703 * 11 10 9 13 13 H 1.09003 * 113.09648 * 203.32996 * 12 11 10 14 14 C 1.54679 * 108.46108 * 77.07710 * 12 11 10 15 15 C 1.54840 * 102.93938 * 212.20309 * 14 12 11 16 16 C 1.54208 * 104.19652 * 38.01607 * 15 14 12 17 17 H 1.09002 * 110.00586 * 95.27034 * 16 15 14 18 18 O 1.42902 * 110.00685 * 216.58670 * 16 15 14 19 19 C 1.46907 * 125.61750 * 180.02562 * 9 7 2 20 20 H 1.08996 * 111.69826 * 305.86366 * 19 9 7 21 21 H 0.96998 * 120.00328 * 359.97438 * 1 2 3 22 22 H 1.09007 * 110.37903 * 272.96296 * 10 9 7 23 23 H 1.08998 * 110.38006 * 35.20557 * 10 9 7 24 24 H 1.08994 * 110.85184 * 278.90695 * 11 10 9 25 25 H 1.09000 * 111.82572 * 154.65915 * 11 10 9 26 26 H 1.09001 * 110.72755 * 93.83914 * 14 12 11 27 27 H 1.08996 * 110.87136 * 330.62802 * 14 12 11 28 28 H 1.09001 * 110.48317 * 279.33527 * 15 14 12 29 29 H 1.09000 * 110.48999 * 156.69675 * 15 14 12 30 30 H 0.96702 * 113.99594 * 297.97159 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1409 -2.5323 -0.0005 11 6 -0.4122 -3.9303 -0.6579 12 6 0.7755 -4.7561 -0.1046 13 1 1.0216 -5.6188 -0.7237 14 6 0.4687 -5.1319 1.3641 15 6 1.8725 -5.1529 2.0172 16 6 2.6158 -3.9757 1.3539 17 1 2.5395 -3.0865 1.9797 18 8 3.9893 -4.3155 1.1533 19 6 1.9322 -3.7260 -0.0005 20 1 2.6390 -3.8481 -0.8213 21 1 -0.4850 0.8400 0.0004 22 1 -0.5238 -2.5169 1.0199 23 1 -0.6004 -1.7386 -0.5896 24 1 -0.3669 -3.8633 -1.7448 25 1 -1.3637 -4.3523 -0.3346 26 1 0.0021 -6.1153 1.4213 27 1 -0.1637 -4.3786 1.8338 28 1 2.3792 -6.0938 1.8022 29 1 1.7951 -4.9975 3.0932 30 1 4.4736 -4.4945 1.9709 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599682217.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:05 Heat of formation + Delta-G solvation = -52.388536 kcal Electronic energy + Delta-G solvation = -13281.418449 eV Core-core repulsion = 11075.964221 eV Total energy + Delta-G solvation = -2205.454228 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.68450 -37.27384 -35.34376 -32.94900 -31.55950 -28.38377 -27.31887 -25.48660 -22.27553 -21.52390 -20.23858 -18.99026 -18.18348 -16.73662 -16.11139 -15.79975 -15.33231 -15.01719 -14.85003 -13.87923 -13.46702 -13.19910 -13.08408 -12.71083 -12.68353 -12.14678 -12.03446 -11.86387 -11.71923 -11.42027 -11.31207 -11.14476 -10.80706 -10.66914 -8.90485 -7.77886 -5.23501 1.43550 1.44412 1.55301 2.46721 3.23767 3.43476 3.53398 3.75980 4.00120 4.08493 4.36497 4.47056 4.53410 4.66346 4.70347 4.79024 4.90630 5.03260 5.08447 5.13228 5.24603 5.43761 5.51523 5.56776 5.67729 5.84236 6.33528 6.97324 7.11789 7.78901 8.42209 9.22215 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041306 B = 0.013640 C = 0.011143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.707611 B = 2052.312489 C = 2512.081950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.065 4.065 3 Si 0.978 3.022 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.233 4.233 8 H 0.070 0.930 9 N -0.611 5.611 10 C 0.151 3.849 11 C -0.130 4.130 12 C -0.092 4.092 13 H 0.107 0.893 14 C -0.107 4.107 15 C -0.140 4.140 16 C 0.084 3.916 17 H 0.030 0.970 18 O -0.582 6.582 19 C 0.152 3.848 20 H 0.028 0.972 21 H 0.248 0.752 22 H -0.009 1.009 23 H 0.075 0.925 24 H 0.056 0.944 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.415 -10.614 3.106 11.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.257 4.257 3 Si 0.806 3.194 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.362 4.362 8 H 0.088 0.912 9 N -0.335 5.335 10 C 0.026 3.974 11 C -0.169 4.169 12 C -0.111 4.111 13 H 0.125 0.875 14 C -0.145 4.145 15 C -0.178 4.178 16 C 0.023 3.977 17 H 0.048 0.952 18 O -0.389 6.389 19 C 0.045 3.955 20 H 0.046 0.954 21 H 0.058 0.942 22 H 0.009 0.991 23 H 0.093 0.907 24 H 0.075 0.925 25 H 0.108 0.892 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 1.226 -10.299 2.482 10.664 hybrid contribution 0.597 1.275 0.661 1.555 sum 1.823 -9.023 3.143 9.727 Atomic orbital electron populations 1.70025 1.06026 1.24908 1.58714 1.25581 0.96648 1.00751 1.02769 0.85014 0.77915 0.79491 0.76961 1.19628 1.21532 1.21622 1.19372 0.90637 0.83916 1.42264 0.91208 1.44721 1.02717 1.00213 1.85816 1.22151 0.83617 0.95278 0.96352 1.23208 0.98156 0.95942 0.99550 1.22875 0.93841 0.96580 0.97803 0.87524 1.22397 0.96396 1.01981 0.93699 1.22957 0.96591 0.98412 0.99797 1.23221 0.80877 0.95604 0.97999 0.95228 1.86495 1.23276 1.92063 1.37058 1.21573 0.94164 0.85830 0.93975 0.95404 0.94242 0.99111 0.90694 0.92500 0.89179 0.88544 0.92831 0.89062 0.90916 0.76602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.33 10.05 21.65 0.22 -57.11 16 2 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 3 Si 0.98 47.09 29.55 68.60 2.03 49.12 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 7 C -0.23 -13.64 9.91 84.03 0.83 -12.81 16 8 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.61 -32.62 2.94 -661.61 -1.95 -34.57 16 10 C 0.15 7.59 5.58 87.56 0.49 8.08 16 11 C -0.13 -4.91 6.58 32.58 0.21 -4.69 16 12 C -0.09 -3.19 4.01 -8.81 -0.04 -3.22 16 13 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 14 C -0.11 -3.19 6.10 31.79 0.19 -2.99 16 15 C -0.14 -4.05 6.55 31.63 0.21 -3.84 16 16 C 0.08 3.26 3.90 31.26 0.12 3.39 16 17 H 0.03 1.35 7.69 -2.39 -0.02 1.34 16 18 O -0.58 -20.81 13.24 -148.98 -1.97 -22.78 16 19 C 0.15 6.71 3.69 45.94 0.17 6.88 16 20 H 0.03 1.34 7.99 -2.39 -0.02 1.32 16 21 H 0.25 14.47 8.31 -92.71 -0.77 13.69 16 22 H -0.01 -0.48 7.23 -2.38 -0.02 -0.50 16 23 H 0.08 4.32 5.74 -2.39 -0.01 4.31 16 24 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.09 2.84 8.05 -2.39 -0.02 2.83 16 26 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.05 1.82 6.70 -2.39 -0.02 1.81 16 28 H 0.09 2.24 8.08 -2.39 -0.02 2.22 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.39 9.60 9.11 -74.06 -0.67 8.92 16 Total: -1.00 -68.00 238.19 1.44 -66.57 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.45 Total: 11.32 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 2.66 Total: -12.54 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -1.73 Total: -91.68 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -1.97 Total: -22.78 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -68.00 1.44 -66.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599682217.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.177 kcal (2) G-P(sol) polarization free energy of solvation -68.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds