Wall clock time and date at job start Mon Mar 30 2020 02:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52998 * 115.56568 * 2 1 4 4 C 1.53000 * 117.50008 * 214.31049 * 2 1 3 5 5 C 1.52997 * 60.00347 * 252.51154 * 4 2 1 6 6 C 1.53001 * 117.51528 * 252.52230 * 5 4 2 7 7 C 1.50697 * 117.49950 * 107.48460 * 5 4 2 8 8 O 1.21293 * 120.00315 * 291.37783 * 7 5 4 9 9 N 1.34779 * 119.99671 * 111.38467 * 7 5 4 10 10 C 1.37096 * 119.99971 * 179.97438 * 9 7 5 11 11 H 1.08001 * 119.99880 * 359.97438 * 10 9 7 12 12 C 1.38953 * 120.00125 * 179.97438 * 10 9 7 13 13 N 1.31409 * 120.00147 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99844 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46983 * 90.00269 * 14 12 10 16 16 H 1.48503 * 109.47181 * 210.00212 * 14 12 10 17 17 H 1.48504 * 109.47102 * 330.00249 * 14 12 10 18 18 H 1.09002 * 109.47378 * 274.30968 * 1 2 3 19 19 H 1.09004 * 109.47432 * 34.31274 * 1 2 3 20 20 H 1.09003 * 109.47662 * 154.31268 * 1 2 3 21 21 H 1.09000 * 109.47691 * 205.68877 * 3 2 1 22 22 H 1.09000 * 109.46743 * 325.69107 * 3 2 1 23 23 H 1.08997 * 109.47164 * 85.68480 * 3 2 1 24 24 H 1.09002 * 117.49696 * 0.02562 * 4 2 1 25 25 H 1.09002 * 117.50343 * 145.02258 * 4 2 1 26 26 H 1.09004 * 109.46885 * 128.62952 * 6 5 4 27 27 H 1.09001 * 109.46454 * 248.61964 * 6 5 4 28 28 H 1.08998 * 109.47494 * 8.62107 * 6 5 4 29 29 H 0.97001 * 120.00143 * 359.97438 * 9 7 5 30 30 H 0.96997 * 120.00242 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2364 -1.1211 0.7650 6 6 3.5487 -0.7758 1.4718 7 6 1.3719 -2.1406 1.4608 8 8 0.1636 -2.0532 1.4012 9 7 1.9414 -3.1496 2.1494 10 6 1.1550 -4.0768 2.7828 11 1 0.0791 -3.9986 2.7304 12 6 1.7422 -5.1174 3.4923 13 7 0.9884 -6.0065 4.0991 14 14 3.6030 -5.2531 3.5824 15 1 4.0977 -4.4997 4.7627 16 1 3.9897 -6.6813 3.7092 17 1 4.2011 -4.6861 2.3470 18 1 -0.3634 0.0772 1.0248 19 1 -0.3634 0.8488 -0.5793 20 1 -0.3634 -0.9261 -0.4454 21 1 3.1824 1.3084 -0.4455 22 1 1.5811 2.0742 -0.5793 23 1 2.2772 1.7413 1.0247 24 1 1.6111 -1.8582 -1.2686 25 1 3.1715 -0.8752 -1.2683 26 1 3.3693 0.0071 2.2087 27 1 3.9363 -1.6634 1.9719 28 1 4.2751 -0.4253 0.7387 29 1 2.9077 -3.2196 2.1968 30 1 1.3982 -6.7330 4.5940 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606248651.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:39 Heat of formation + Delta-G solvation = -41.697982 kcal Electronic energy + Delta-G solvation = -12843.602440 eV Core-core repulsion = 10638.611790 eV Total energy + Delta-G solvation = -2204.990650 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.18766 -38.37762 -36.02970 -33.88049 -31.43578 -28.80725 -27.93557 -27.05248 -23.56242 -21.09798 -20.79064 -18.96768 -17.42868 -16.84414 -15.75037 -15.69148 -15.24248 -14.83700 -14.57392 -14.29740 -13.91906 -13.76724 -13.09433 -13.03745 -12.98837 -12.73215 -12.59886 -12.43256 -12.05293 -11.97721 -11.56271 -10.81397 -10.52233 -10.26962 -10.06054 -8.45560 -6.05615 1.25599 1.30116 1.39707 1.81188 2.18692 2.74681 2.89241 3.17398 3.67626 3.87941 3.96102 4.19880 4.26938 4.66314 4.80506 4.84655 4.86901 4.96003 4.99796 5.10003 5.14901 5.19487 5.29466 5.39912 5.53050 5.64876 5.92503 6.55223 6.84177 7.36936 7.94152 8.72210 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.052742 B = 0.010824 C = 0.009494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.758373 B = 2586.338224 C = 2948.517644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.095 4.095 3 C -0.105 4.105 4 C -0.137 4.137 5 C -0.167 4.167 6 C -0.109 4.109 7 C 0.479 3.521 8 O -0.615 6.615 9 N -0.587 5.587 10 C -0.330 4.330 11 H 0.056 0.944 12 C -0.013 4.013 13 N -0.932 5.932 14 Si 0.959 3.041 15 H -0.253 1.253 16 H -0.270 1.270 17 H -0.236 1.236 18 H 0.035 0.965 19 H 0.071 0.929 20 H 0.033 0.967 21 H 0.081 0.919 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.138 0.862 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.099 0.901 29 H 0.387 0.613 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.044 12.236 -8.019 18.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 C -0.162 4.162 4 C -0.175 4.175 5 C -0.170 4.170 6 C -0.166 4.166 7 C 0.268 3.732 8 O -0.500 6.500 9 N -0.228 5.228 10 C -0.459 4.459 11 H 0.074 0.926 12 C -0.212 4.212 13 N -0.573 5.573 14 Si 0.778 3.222 15 H -0.177 1.177 16 H -0.194 1.194 17 H -0.160 1.160 18 H 0.054 0.946 19 H 0.089 0.911 20 H 0.052 0.948 21 H 0.100 0.900 22 H 0.093 0.907 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.156 0.844 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.118 0.882 29 H 0.224 0.776 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.212 12.092 -7.915 17.696 hybrid contribution 0.147 -1.011 0.599 1.184 sum 10.359 11.081 -7.316 16.841 Atomic orbital electron populations 1.21204 0.92941 1.00398 1.00691 1.21752 0.94600 0.92114 1.01083 1.21361 1.00792 0.91498 1.02524 1.23417 1.03499 1.00564 0.89976 1.21605 0.99398 1.00383 0.95643 1.21379 0.92718 1.01599 1.00906 1.20027 0.88154 0.83195 0.81867 1.90527 1.16800 1.77112 1.65610 1.42075 1.08284 1.24796 1.47658 1.19043 0.91863 1.05653 1.29387 0.92624 1.26089 1.05369 0.94451 0.95316 1.69793 1.38490 1.15129 1.33856 0.85454 0.76630 0.79402 0.80675 1.17733 1.19431 1.15971 0.94555 0.91068 0.94816 0.90004 0.90704 0.92046 0.90687 0.84402 0.91254 0.93036 0.88249 0.77637 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.32 8.09 71.98 0.58 -2.73 16 2 C -0.09 -2.78 2.70 -52.18 -0.14 -2.92 16 3 C -0.10 -2.07 8.88 71.98 0.64 -1.43 16 4 C -0.14 -3.86 9.17 30.59 0.28 -3.58 16 5 C -0.17 -5.68 2.61 -52.93 -0.14 -5.82 16 6 C -0.11 -2.79 8.82 71.98 0.63 -2.15 16 7 C 0.48 23.28 7.32 87.66 0.64 23.92 16 8 O -0.61 -35.24 12.68 -3.07 -0.04 -35.28 16 9 N -0.59 -29.66 4.99 -306.98 -1.53 -31.19 16 10 C -0.33 -20.13 10.16 84.04 0.85 -19.27 16 11 H 0.06 4.00 7.39 -2.91 -0.02 3.98 16 12 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 13 N -0.93 -57.31 13.96 21.66 0.30 -57.01 16 14 Si 0.96 40.09 27.74 68.60 1.90 41.99 16 15 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 16 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 17 H -0.24 -8.56 6.52 99.48 0.65 -7.91 16 18 H 0.04 1.46 7.26 -2.39 -0.02 1.45 16 19 H 0.07 1.94 7.92 -2.38 -0.02 1.92 16 20 H 0.03 1.35 7.01 -2.39 -0.02 1.33 16 21 H 0.08 1.21 7.77 -2.39 -0.02 1.19 16 22 H 0.07 1.27 7.92 -2.39 -0.02 1.25 16 23 H 0.06 1.21 8.02 -2.39 -0.02 1.19 16 24 H 0.07 2.42 8.05 -2.39 -0.02 2.40 16 25 H 0.14 2.69 7.96 -2.39 -0.02 2.67 16 26 H 0.07 1.68 8.02 -2.39 -0.02 1.66 16 27 H 0.05 1.38 6.38 -2.39 -0.02 1.36 16 28 H 0.10 1.77 7.78 -2.39 -0.02 1.75 16 29 H 0.39 16.66 4.06 -92.71 -0.38 16.28 16 30 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -75.03 247.20 5.15 -69.88 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.69 Total: 25.91 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 3.82 Total: -14.29 kcal Atomic # 7 Polarization: -86.97 SS G_CDS: -1.23 Total: -88.20 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.04 Total: -35.28 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.90 Total: 41.99 kcal Total: -75.03 5.15 -69.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248651.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.182 kcal (2) G-P(sol) polarization free energy of solvation -75.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds