Wall clock time and date at job start Mon Mar 30 2020 02:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 120.00404 * 2 1 4 4 H 1.48492 * 109.47104 * 274.08038 * 3 2 1 5 5 H 1.48503 * 109.46785 * 34.07941 * 3 2 1 6 6 H 1.48504 * 109.47116 * 154.07825 * 3 2 1 7 7 C 1.38818 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99773 * 189.26074 * 7 2 1 9 9 N 1.36936 * 119.99861 * 9.26735 * 7 2 1 10 10 C 1.50238 * 130.84024 * 5.37507 * 9 7 2 11 11 C 1.55841 * 101.05183 * 126.01630 * 10 9 7 12 12 C 1.55871 * 103.53018 * 32.33122 * 11 10 9 13 13 C 1.50246 * 130.83741 * 185.35306 * 9 7 2 14 14 C 1.53000 * 115.85693 * 0.37321 * 13 9 7 15 15 O 1.42904 * 109.46954 * 180.02562 * 14 13 9 16 16 C 1.55846 * 101.05032 * 126.04731 * 13 9 7 17 17 C 1.54851 * 103.44469 * 32.93714 * 16 13 9 18 18 H 0.97000 * 119.99843 * 359.97438 * 1 2 3 19 19 H 1.08995 * 115.85626 * 0.33302 * 10 9 7 20 20 H 1.08997 * 110.63067 * 151.42469 * 11 10 9 21 21 H 1.08998 * 110.62227 * 274.44889 * 11 10 9 22 22 H 1.09000 * 111.60641 * 242.19733 * 12 11 10 23 23 H 1.08998 * 110.09871 * 118.86455 * 12 11 10 24 24 H 1.09002 * 109.47055 * 300.00176 * 14 13 9 25 25 H 1.08997 * 109.47313 * 59.99793 * 14 13 9 26 26 H 0.96700 * 113.99537 * 179.97438 * 15 14 13 27 27 H 1.08995 * 110.61938 * 151.42719 * 16 13 9 28 28 H 1.08995 * 110.62466 * 274.44844 * 16 13 9 29 29 H 1.08996 * 110.62852 * 241.51030 * 17 16 13 30 30 H 1.09004 * 110.62776 * 118.48528 * 17 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4115 2.0962 -1.3965 5 1 1.4935 2.6262 0.7846 6 1 3.5883 1.4167 0.6120 7 6 2.0102 -1.2022 0.0005 8 1 3.0796 -1.2082 0.1511 9 7 1.3388 -2.3804 -0.1899 10 6 -0.1016 -2.6477 -0.5230 11 6 0.0460 -3.5451 -1.7885 12 6 1.3690 -4.3273 -1.5287 13 6 1.8161 -3.8038 -0.1305 14 6 3.2962 -3.9979 0.2048 15 8 3.6010 -5.3939 0.2247 16 6 0.8096 -4.4140 0.8910 17 6 -0.4966 -3.6264 0.6237 18 1 -0.4850 0.8401 0.0004 19 1 -0.7333 -1.7675 -0.6416 20 1 -0.8009 -4.2254 -1.8779 21 1 0.1437 -2.9322 -2.6845 22 1 2.1234 -4.1015 -2.2824 23 1 1.1699 -5.3983 -1.4920 24 1 3.9076 -3.5036 -0.5502 25 1 3.5069 -3.5656 1.1829 26 1 4.5248 -5.5918 0.4307 27 1 0.6636 -5.4767 0.6981 28 1 1.1535 -4.2517 1.9125 29 1 -0.8006 -3.0737 1.5126 30 1 -1.2906 -4.2987 0.2981 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642878778.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:37 Heat of formation + Delta-G solvation = -31.964989 kcal Electronic energy + Delta-G solvation = -13356.295587 eV Core-core repulsion = 11151.726991 eV Total energy + Delta-G solvation = -2204.568596 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.75513 -37.36595 -34.59803 -31.38883 -31.04997 -30.47984 -26.39289 -25.68604 -22.88400 -21.28470 -19.69608 -18.46052 -18.01814 -16.68014 -16.20355 -16.05848 -15.67764 -14.80361 -14.17484 -13.73597 -13.51756 -13.29002 -12.82829 -12.73517 -12.67287 -12.26883 -11.98265 -11.94931 -11.64405 -11.30738 -11.05652 -10.96543 -10.79911 -10.49959 -8.87354 -7.79621 -5.15519 1.46643 1.48574 1.56399 2.47270 3.09930 3.34407 3.84384 4.00206 4.06589 4.21252 4.45301 4.46048 4.52477 4.57700 4.69185 4.79368 4.97244 5.00728 5.12147 5.15463 5.23696 5.40226 5.53008 5.54384 5.72391 5.92158 6.24797 6.94042 7.04511 7.71595 8.60456 9.30879 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.038414 B = 0.014466 C = 0.012086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.716865 B = 1935.150380 C = 2316.199096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.070 4.070 3 Si 0.974 3.026 4 H -0.291 1.291 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.219 4.219 8 H 0.081 0.919 9 N -0.611 5.611 10 C 0.140 3.860 11 C -0.132 4.132 12 C -0.107 4.107 13 C 0.146 3.854 14 C 0.116 3.884 15 O -0.573 6.573 16 C -0.109 4.109 17 C -0.127 4.127 18 H 0.247 0.753 19 H 0.110 0.890 20 H 0.077 0.923 21 H 0.038 0.962 22 H 0.048 0.952 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.040 0.960 26 H 0.397 0.603 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.032 0.968 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.968 -8.677 -0.627 9.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.262 4.262 3 Si 0.803 3.197 4 H -0.218 1.218 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.348 4.348 8 H 0.098 0.902 9 N -0.335 5.335 10 C 0.034 3.966 11 C -0.171 4.171 12 C -0.146 4.146 13 C 0.058 3.942 14 C 0.038 3.962 15 O -0.380 6.380 16 C -0.148 4.148 17 C -0.166 4.166 18 H 0.056 0.944 19 H 0.127 0.873 20 H 0.096 0.904 21 H 0.057 0.943 22 H 0.066 0.934 23 H 0.093 0.907 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.246 0.754 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.398 -8.431 -0.726 9.119 hybrid contribution 0.820 1.300 0.249 1.557 sum 4.218 -7.131 -0.478 8.299 Atomic orbital electron populations 1.69842 1.06235 1.25013 1.58608 1.25473 0.96423 1.00470 1.03871 0.85109 0.77813 0.79651 0.77088 1.21817 1.22416 1.19372 1.19341 0.91462 0.83610 1.40356 0.90159 1.46764 1.06639 0.99304 1.80759 1.23433 0.86214 0.95283 0.91683 1.23163 0.97445 0.98197 0.98291 1.22897 0.96540 0.98701 0.96436 1.22403 0.91889 0.84808 0.95080 1.21382 0.93847 0.81984 0.99024 1.86373 1.34402 1.22851 1.94412 1.22733 0.95690 0.98479 0.97895 1.22918 0.96956 0.97760 0.98995 0.94388 0.87304 0.90438 0.94321 0.93351 0.90745 0.93750 0.94153 0.75395 0.90660 0.94115 0.94925 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.51 10.64 21.65 0.23 -56.28 16 2 C -0.07 -3.95 5.47 84.86 0.46 -3.48 16 3 Si 0.97 45.79 29.56 68.60 2.03 47.82 16 4 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.22 -12.12 10.12 84.04 0.85 -11.27 16 8 H 0.08 4.24 7.64 -2.91 -0.02 4.22 16 9 N -0.61 -31.14 2.98 -593.61 -1.77 -32.91 16 10 C 0.14 6.75 4.67 46.23 0.22 6.97 16 11 C -0.13 -5.32 6.47 32.57 0.21 -5.11 16 12 C -0.11 -4.05 6.09 32.57 0.20 -3.86 16 13 C 0.15 6.03 1.47 4.84 0.01 6.04 16 14 C 0.12 4.15 6.32 71.98 0.45 4.61 16 15 O -0.57 -16.67 13.47 -148.98 -2.01 -18.68 16 16 C -0.11 -4.27 6.01 32.21 0.19 -4.08 16 17 C -0.13 -5.34 6.44 32.21 0.21 -5.13 16 18 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 19 H 0.11 6.08 5.72 -2.39 -0.01 6.06 16 20 H 0.08 2.66 7.82 -2.39 -0.02 2.64 16 21 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.07 2.49 7.85 -2.39 -0.02 2.47 16 24 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.40 7.12 9.12 -74.06 -0.68 6.45 16 27 H 0.07 2.59 7.85 -2.39 -0.02 2.57 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 2.66 7.82 -2.38 -0.02 2.65 16 Total: -1.00 -64.43 242.01 1.74 -62.69 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.45 Total: 12.66 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 2.80 Total: -15.31 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -1.54 Total: -89.19 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -2.01 Total: -18.68 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -64.43 1.74 -62.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642878778.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.726 kcal (2) G-P(sol) polarization free energy of solvation -64.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds