Wall clock time and date at job start Mon Mar 30 2020 02:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47586 * 2 1 4 4 C 1.50701 * 109.46976 * 240.00026 * 2 1 3 5 5 N 1.33315 * 126.55324 * 285.02734 * 4 2 1 6 6 N 1.28995 * 107.35494 * 179.97438 * 5 4 2 7 7 N 1.28778 * 108.72888 * 0.02562 * 6 5 4 8 8 H 0.97003 * 125.45023 * 179.97438 * 7 6 5 9 9 N 1.28884 * 109.09781 * 359.72945 * 7 6 5 10 10 N 1.46502 * 109.47102 * 120.00629 * 2 1 3 11 11 C 1.46497 * 120.00283 * 59.99324 * 10 2 1 12 12 C 1.36937 * 119.99798 * 240.00177 * 10 2 1 13 13 H 1.08001 * 120.00384 * 23.18854 * 12 10 2 14 14 C 1.38814 * 119.99766 * 203.19394 * 12 10 2 15 15 N 1.31618 * 120.00030 * 13.52256 * 14 12 10 16 16 Si 1.86799 * 119.99900 * 193.52345 * 14 12 10 17 17 H 1.48496 * 109.47101 * 89.99566 * 16 14 12 18 18 H 1.48501 * 109.47220 * 209.99806 * 16 14 12 19 19 H 1.48498 * 109.47034 * 329.99849 * 16 14 12 20 20 H 1.09004 * 109.46729 * 299.99730 * 1 2 3 21 21 H 1.09001 * 109.47017 * 59.99435 * 1 2 3 22 22 H 1.09000 * 109.47132 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46987 * 95.15945 * 11 10 2 24 24 H 1.09000 * 109.47076 * 335.16067 * 11 10 2 25 25 H 1.09003 * 109.47344 * 215.16049 * 11 10 2 26 26 H 0.97003 * 120.00250 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.0352 -2.0267 -1.4418 6 7 2.5444 -2.2278 -2.6098 7 7 2.8559 -1.0901 -3.1265 8 1 3.2569 -0.9599 -4.0001 9 7 2.5448 -0.1520 -2.2994 10 7 2.0184 -0.6907 1.1961 11 6 1.6644 -2.0933 1.4279 12 6 2.8056 -0.0253 2.0976 13 1 2.7698 1.0527 2.1535 14 6 3.6498 -0.7363 2.9395 15 7 3.8978 -2.0070 2.7027 16 14 4.4336 0.1104 4.4085 17 1 3.5457 -0.0268 5.5908 18 1 5.7468 -0.5188 4.6999 19 1 4.6315 1.5500 4.1026 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 2.4607 -2.7358 1.0523 24 1 0.7350 -2.3243 0.9073 25 1 1.5340 -2.2633 2.4967 26 1 4.4874 -2.5040 3.2912 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687798797.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:29 Heat of formation + Delta-G solvation = 147.136123 kcal Electronic energy + Delta-G solvation = -12705.929079 eV Core-core repulsion = 10437.879298 eV Total energy + Delta-G solvation = -2268.049781 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.71512 -36.40740 -33.46207 -32.87132 -31.20280 -28.94611 -25.96512 -24.31025 -23.75535 -22.47988 -19.84450 -18.28083 -16.69358 -16.38078 -15.03759 -14.48028 -13.77654 -13.22354 -12.90559 -12.37002 -11.76071 -11.65099 -11.35727 -10.83882 -10.70191 -10.57415 -10.49260 -10.46912 -10.20696 -9.97857 -9.82442 -9.49674 -8.55215 -6.82849 -5.72474 -3.22424 1.78538 2.88232 2.95179 3.39303 3.44897 3.46439 4.45904 4.68354 5.08303 5.45282 5.59508 5.94068 6.05893 6.22891 6.32237 6.46054 6.65210 6.84950 7.02322 7.06477 7.49072 7.80705 7.98632 8.37714 8.96556 9.21107 9.82106 10.32147 11.29628 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.048146 B = 0.011320 C = 0.010781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.421076 B = 2472.926691 C = 2596.625069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.255 3.745 3 H 0.090 0.910 4 C 0.183 3.817 5 N -0.257 5.257 6 N -0.076 5.076 7 N -0.249 5.249 8 H 0.463 0.537 9 N -0.323 5.323 10 N -0.577 5.577 11 C 0.164 3.836 12 C -0.266 4.266 13 H 0.073 0.927 14 C 0.007 3.993 15 N -0.896 5.896 16 Si 0.908 3.092 17 H -0.286 1.286 18 H -0.292 1.292 19 H -0.278 1.278 20 H 0.068 0.932 21 H 0.045 0.955 22 H 0.058 0.942 23 H 0.039 0.961 24 H 0.009 0.991 25 H 0.038 0.962 26 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.855 2.967 -8.168 9.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.142 3.858 3 H 0.108 0.892 4 C -0.103 4.103 5 N -0.131 5.131 6 N -0.072 5.072 7 N -0.093 5.093 8 H 0.315 0.685 9 N -0.175 5.175 10 N -0.297 5.297 11 C 0.020 3.980 12 C -0.396 4.396 13 H 0.091 0.909 14 C -0.193 4.193 15 N -0.539 5.539 16 Si 0.737 3.263 17 H -0.212 1.212 18 H -0.218 1.218 19 H -0.204 1.204 20 H 0.087 0.913 21 H 0.064 0.936 22 H 0.077 0.923 23 H 0.057 0.943 24 H 0.027 0.973 25 H 0.057 0.943 26 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.626 2.306 -8.348 9.389 hybrid contribution 0.950 0.721 0.383 1.253 sum -2.676 3.027 -7.965 8.931 Atomic orbital electron populations 1.22202 0.96000 1.02129 1.01030 1.19003 0.92759 0.94796 0.79269 0.89195 1.27792 0.97738 0.88851 0.95911 1.75896 1.15848 1.16216 1.05107 1.78868 1.12870 1.10169 1.05253 1.47736 1.41819 1.02126 1.17616 0.68513 1.74699 1.20209 1.19694 1.02881 1.44148 1.57318 1.10659 1.17604 1.20822 0.95330 0.83681 0.98156 1.19296 1.17185 0.91500 1.11582 0.90922 1.25138 0.97280 0.96339 1.00514 1.70121 1.37972 1.08229 1.37616 0.86211 0.78434 0.78794 0.82811 1.21249 1.21788 1.20357 0.91342 0.93553 0.92346 0.94277 0.97290 0.94339 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.16 37.16 0.34 -2.36 15 2 C 0.26 5.42 3.26 -69.08 -0.22 5.20 15 3 H 0.09 1.86 7.87 -51.93 -0.41 1.45 15 4 C 0.18 3.86 7.11 -156.63 -1.11 2.75 15 5 N -0.26 -5.63 10.98 32.45 0.36 -5.27 15 6 N -0.08 -1.42 13.48 60.35 0.81 -0.61 15 7 N -0.25 -3.87 7.91 60.34 0.48 -3.40 15 8 H 0.46 4.58 8.96 -340.52 -3.05 1.52 15 9 N -0.32 -5.99 12.36 32.47 0.40 -5.59 15 10 N -0.58 -14.66 2.80 -174.81 -0.49 -15.15 15 11 C 0.16 4.20 7.39 59.85 0.44 4.64 15 12 C -0.27 -7.29 9.58 -15.06 -0.14 -7.43 15 13 H 0.07 1.91 7.83 -52.49 -0.41 1.50 15 14 C 0.01 0.20 5.09 -17.43 -0.09 0.11 15 15 N -0.90 -26.53 10.75 55.49 0.60 -25.94 15 16 Si 0.91 21.78 29.57 -169.99 -5.03 16.75 15 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 18 H -0.29 -7.10 7.11 56.52 0.40 -6.69 15 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 20 H 0.07 1.15 8.14 -51.93 -0.42 0.73 15 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 22 H 0.06 1.06 6.67 -51.93 -0.35 0.71 15 23 H 0.04 1.11 7.12 -51.93 -0.37 0.74 15 24 H 0.01 0.20 6.40 -51.93 -0.33 -0.13 15 25 H 0.04 1.03 7.37 -51.93 -0.38 0.65 15 26 H 0.25 7.27 8.31 -40.82 -0.34 6.93 15 LS Contribution 227.59 15.07 3.43 3.43 Total: -1.00 -32.14 227.59 -5.51 -37.66 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -5.28 Total: -4.80 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -0.79 Total: 2.91 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: 2.16 Total: -55.95 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -32.14 -5.51 -37.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687798797.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.793 kcal (2) G-P(sol) polarization free energy of solvation -32.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds