Wall clock time and date at job start Mon Mar 30 2020 02:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47586 * 2 1 4 4 C 1.50701 * 109.46976 * 240.00026 * 2 1 3 5 5 N 1.33315 * 126.55324 * 285.02734 * 4 2 1 6 6 N 1.28995 * 107.35494 * 179.97438 * 5 4 2 7 7 N 1.28778 * 108.72888 * 0.02562 * 6 5 4 8 8 H 0.97003 * 125.45023 * 179.97438 * 7 6 5 9 9 N 1.28884 * 109.09781 * 359.72945 * 7 6 5 10 10 N 1.46502 * 109.47102 * 120.00629 * 2 1 3 11 11 C 1.46497 * 120.00283 * 59.99324 * 10 2 1 12 12 C 1.36937 * 119.99798 * 240.00177 * 10 2 1 13 13 H 1.08001 * 120.00384 * 23.18854 * 12 10 2 14 14 C 1.38814 * 119.99766 * 203.19394 * 12 10 2 15 15 N 1.31618 * 120.00030 * 13.52256 * 14 12 10 16 16 Si 1.86799 * 119.99900 * 193.52345 * 14 12 10 17 17 H 1.48496 * 109.47101 * 89.99566 * 16 14 12 18 18 H 1.48501 * 109.47220 * 209.99806 * 16 14 12 19 19 H 1.48498 * 109.47034 * 329.99849 * 16 14 12 20 20 H 1.09004 * 109.46729 * 299.99730 * 1 2 3 21 21 H 1.09001 * 109.47017 * 59.99435 * 1 2 3 22 22 H 1.09000 * 109.47132 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46987 * 95.15945 * 11 10 2 24 24 H 1.09000 * 109.47076 * 335.16067 * 11 10 2 25 25 H 1.09003 * 109.47344 * 215.16049 * 11 10 2 26 26 H 0.97003 * 120.00250 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.0352 -2.0267 -1.4418 6 7 2.5444 -2.2278 -2.6098 7 7 2.8559 -1.0901 -3.1265 8 1 3.2569 -0.9599 -4.0001 9 7 2.5448 -0.1520 -2.2994 10 7 2.0184 -0.6907 1.1961 11 6 1.6644 -2.0933 1.4279 12 6 2.8056 -0.0253 2.0976 13 1 2.7698 1.0527 2.1535 14 6 3.6498 -0.7363 2.9395 15 7 3.8978 -2.0070 2.7027 16 14 4.4336 0.1104 4.4085 17 1 3.5457 -0.0268 5.5908 18 1 5.7468 -0.5188 4.6999 19 1 4.6315 1.5500 4.1026 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 2.4607 -2.7358 1.0523 24 1 0.7350 -2.3243 0.9073 25 1 1.5340 -2.2633 2.4967 26 1 4.4874 -2.5040 3.2912 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687798797.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:29 Heat of formation + Delta-G solvation = 123.549693 kcal Electronic energy + Delta-G solvation = -12706.951864 eV Core-core repulsion = 10437.879298 eV Total energy + Delta-G solvation = -2269.072566 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.23406 -38.21496 -35.09048 -34.58495 -32.96475 -30.70471 -28.00761 -25.94499 -25.29129 -24.30914 -21.51255 -19.81972 -18.68342 -17.88569 -16.95971 -16.17540 -15.61630 -14.97381 -14.60064 -14.17018 -13.49012 -13.25467 -12.96777 -12.70391 -12.58387 -12.33227 -12.21127 -12.08483 -11.96253 -11.76141 -11.72037 -11.08757 -10.62546 -8.87332 -7.80916 -5.34201 0.30486 1.29241 1.49782 1.51966 1.60034 1.69500 2.51529 3.08325 3.38573 3.42342 3.86782 4.40744 4.50952 4.70552 4.77420 4.90870 5.11249 5.15791 5.33088 5.50150 5.68654 5.83888 5.87220 6.31725 7.13346 7.43110 7.82617 8.28734 9.20401 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.048146 B = 0.011320 C = 0.010781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.421076 B = 2472.926691 C = 2596.625069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.250 3.750 3 H 0.095 0.905 4 C 0.166 3.834 5 N -0.294 5.294 6 N -0.077 5.077 7 N -0.213 5.213 8 H 0.488 0.512 9 N -0.314 5.314 10 N -0.593 5.593 11 C 0.188 3.812 12 C -0.272 4.272 13 H 0.083 0.917 14 C -0.051 4.051 15 N -0.935 5.935 16 Si 0.974 3.026 17 H -0.283 1.283 18 H -0.300 1.300 19 H -0.264 1.264 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.050 0.950 23 H 0.004 0.996 24 H 0.030 0.970 25 H 0.013 0.987 26 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.214 4.394 -9.125 10.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.138 3.862 3 H 0.113 0.887 4 C -0.120 4.120 5 N -0.166 5.166 6 N -0.073 5.073 7 N -0.063 5.063 8 H 0.345 0.655 9 N -0.167 5.167 10 N -0.315 5.315 11 C 0.044 3.956 12 C -0.402 4.402 13 H 0.101 0.899 14 C -0.247 4.247 15 N -0.580 5.580 16 Si 0.801 3.199 17 H -0.209 1.209 18 H -0.227 1.227 19 H -0.188 1.188 20 H 0.093 0.907 21 H 0.093 0.907 22 H 0.069 0.931 23 H 0.023 0.977 24 H 0.049 0.951 25 H 0.031 0.969 26 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.002 3.759 -9.356 10.848 hybrid contribution 1.048 0.326 0.475 1.196 sum -2.955 4.086 -8.881 10.212 Atomic orbital electron populations 1.22075 0.93053 1.02161 1.02788 1.19189 0.94687 0.94310 0.77995 0.88735 1.27524 0.98812 0.88855 0.96788 1.75879 1.17419 1.16870 1.06410 1.78801 1.12958 1.10842 1.04655 1.47754 1.39627 1.00916 1.18003 0.65472 1.74634 1.19549 1.19889 1.02634 1.44253 1.57422 1.10381 1.19427 1.20419 0.94962 0.83846 0.96405 1.19708 1.16425 0.92110 1.11913 0.89944 1.25938 0.98414 0.96982 1.03335 1.70306 1.39247 1.09785 1.38676 0.85173 0.76883 0.78307 0.79489 1.20947 1.22674 1.18825 0.90655 0.90702 0.93117 0.97717 0.95119 0.96870 0.94338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 9.16 71.98 0.66 -3.97 15 2 C 0.25 10.23 3.26 44.25 0.14 10.38 15 3 H 0.09 3.73 7.87 -2.39 -0.02 3.71 15 4 C 0.17 6.74 7.11 138.55 0.99 7.72 15 5 N -0.29 -12.55 10.98 -51.26 -0.56 -13.12 15 6 N -0.08 -2.76 13.48 37.02 0.50 -2.26 15 7 N -0.21 -6.05 7.91 37.00 0.29 -5.76 15 8 H 0.49 8.02 8.96 -347.67 -3.12 4.91 15 9 N -0.31 -10.86 12.36 -51.20 -0.63 -11.49 15 10 N -0.59 -29.96 2.80 -706.98 -1.98 -31.94 15 11 C 0.19 9.79 7.39 127.77 0.94 10.73 15 12 C -0.27 -14.77 9.58 84.03 0.80 -13.96 15 13 H 0.08 4.22 7.83 -2.91 -0.02 4.19 15 14 C -0.05 -2.86 5.09 84.86 0.43 -2.43 15 15 N -0.93 -56.62 10.75 21.65 0.23 -56.39 15 16 Si 0.97 44.94 29.57 68.60 2.03 46.97 15 17 H -0.28 -12.80 7.11 99.48 0.71 -12.09 15 18 H -0.30 -14.11 7.11 99.48 0.71 -13.41 15 19 H -0.26 -11.41 7.11 99.48 0.71 -10.70 15 20 H 0.07 2.36 8.14 -2.39 -0.02 2.34 15 21 H 0.07 2.02 8.14 -2.39 -0.02 2.00 15 22 H 0.05 1.74 6.67 -2.39 -0.02 1.72 15 23 H 0.00 0.26 7.12 -2.39 -0.02 0.25 15 24 H 0.03 1.41 6.40 -2.39 -0.02 1.40 15 25 H 0.01 0.71 7.37 -2.39 -0.02 0.69 15 26 H 0.25 14.59 8.31 -92.71 -0.77 13.82 15 Total: -1.00 -68.66 227.59 1.94 -66.72 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -1.91 Total: -1.18 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 3.97 Total: 8.46 kcal Atomic # 7 Polarization: -118.82 SS G_CDS: -2.15 Total: -120.97 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -68.66 1.94 -66.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687798797.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.270 kcal (2) G-P(sol) polarization free energy of solvation -68.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds