Wall clock time and date at job start Mon Mar 30 2020 02:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00294 * 2 1 4 4 H 1.48499 * 109.47165 * 264.95375 * 3 2 1 5 5 H 1.48497 * 109.47019 * 144.95445 * 3 2 1 6 6 H 1.48500 * 109.47148 * 24.95548 * 3 2 1 7 7 C 1.38818 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99876 * 197.40967 * 7 2 1 9 9 N 1.36941 * 119.99651 * 17.40943 * 7 2 1 10 10 C 1.45571 * 117.16978 * 24.45903 * 9 7 2 11 11 C 1.53266 * 108.79239 * 153.97520 * 10 9 7 12 12 C 1.52718 * 107.76900 * 57.71818 * 11 10 9 13 13 C 1.51314 * 111.49519 * 294.37990 * 12 11 10 14 14 H 1.08996 * 109.55451 * 274.41789 * 13 12 11 15 15 C 1.54928 * 109.39872 * 154.35210 * 13 12 11 16 16 O 1.44725 * 104.28009 * 212.26579 * 15 13 12 17 17 C 1.44796 * 104.58090 * 41.67094 * 16 15 13 18 18 C 1.43707 * 117.16537 * 204.20383 * 9 7 2 19 19 H 1.08998 * 108.40390 * 301.24583 * 18 9 7 20 20 H 0.97008 * 119.99987 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.58792 * 273.76694 * 10 9 7 22 22 H 1.08997 * 109.58394 * 34.05233 * 10 9 7 23 23 H 1.09002 * 109.79893 * 177.28440 * 11 10 9 24 24 H 1.09004 * 109.80305 * 298.09286 * 11 10 9 25 25 H 1.09002 * 109.07496 * 54.90764 * 12 11 10 26 26 H 1.09008 * 109.07412 * 173.86172 * 12 11 10 27 27 H 1.08997 * 110.47260 * 330.96189 * 15 13 12 28 28 H 1.08994 * 110.46854 * 93.43853 * 15 13 12 29 29 H 1.09003 * 110.52676 * 76.40364 * 17 16 15 30 30 H 1.08995 * 110.52801 * 199.00971 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6044 1.9848 -1.3946 5 1 3.4904 1.4732 0.8040 6 1 1.3985 2.6811 0.5907 7 6 2.0102 -1.2022 0.0005 8 1 3.0531 -1.2235 0.2804 9 7 1.3725 -2.3611 -0.3538 10 6 0.2044 -2.2407 -1.2141 11 6 0.0358 -3.5438 -2.0031 12 6 -0.0940 -4.6848 -0.9963 13 6 1.1829 -4.8758 -0.2071 14 1 1.8615 -5.5233 -0.7623 15 6 0.8507 -5.5247 1.1600 16 8 1.8397 -4.9782 2.0643 17 6 1.9305 -3.5791 1.7028 18 6 1.9178 -3.5910 0.1514 19 1 2.9494 -3.6759 -0.1902 20 1 -0.4850 0.8401 -0.0004 21 1 -0.6820 -2.0656 -0.6044 22 1 0.3432 -1.4087 -1.9044 23 1 -0.8627 -3.4897 -2.6177 24 1 0.9074 -3.7070 -2.6370 25 1 -0.9086 -4.4610 -0.3074 26 1 -0.3239 -5.6068 -1.5304 27 1 -0.1534 -5.2465 1.4800 28 1 0.9440 -6.6090 1.0999 29 1 1.0733 -3.0279 2.0895 30 1 2.8600 -3.1479 2.0744 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690705410.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:46 Heat of formation + Delta-G solvation = -26.999549 kcal Electronic energy + Delta-G solvation = -13376.382618 eV Core-core repulsion = 11172.029340 eV Total energy + Delta-G solvation = -2204.353278 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.37640 -36.01147 -33.42046 -30.98270 -30.14228 -27.17729 -25.04719 -23.16266 -21.66731 -21.41306 -17.97761 -16.78611 -15.72694 -15.23153 -14.64908 -14.27757 -13.97143 -13.57050 -12.96318 -12.69610 -12.22368 -12.00246 -11.38963 -11.06077 -10.85230 -10.52305 -10.37327 -10.14895 -10.09555 -9.87222 -9.64149 -9.34910 -9.13638 -8.46257 -6.71247 -5.74641 -3.24490 3.37743 3.44544 3.45448 4.44184 4.65178 5.14084 5.21493 5.37942 5.51424 5.53132 5.77019 5.93399 5.98253 6.10718 6.14285 6.30464 6.43632 6.46521 6.64705 6.70066 6.75589 6.78931 6.91597 7.40823 7.41529 7.80027 7.83349 8.45619 9.25702 9.93898 10.28284 11.26633 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044769 B = 0.013492 C = 0.011318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.287089 B = 2074.848399 C = 2473.323029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.007 3.993 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.279 1.279 6 H -0.291 1.291 7 C -0.267 4.267 8 H 0.067 0.933 9 N -0.584 5.584 10 C 0.189 3.811 11 C -0.143 4.143 12 C -0.100 4.100 13 C -0.121 4.121 14 H 0.070 0.930 15 C 0.052 3.948 16 O -0.393 6.393 17 C 0.030 3.970 18 C 0.171 3.829 19 H 0.030 0.970 20 H 0.254 0.746 21 H 0.046 0.954 22 H 0.049 0.951 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.028 -7.619 -1.486 7.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.192 4.192 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.205 1.205 6 H -0.218 1.218 7 C -0.397 4.397 8 H 0.085 0.915 9 N -0.307 5.307 10 C 0.064 3.936 11 C -0.182 4.182 12 C -0.138 4.138 13 C -0.140 4.140 14 H 0.089 0.911 15 C -0.025 4.025 16 O -0.312 6.312 17 C -0.048 4.048 18 C 0.062 3.938 19 H 0.048 0.952 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.047 -7.636 -1.325 7.751 hybrid contribution 0.328 1.066 -0.103 1.121 sum 0.281 -6.570 -1.428 6.729 Atomic orbital electron populations 1.70092 1.05218 1.25459 1.53816 1.25004 0.95257 0.98335 1.00599 0.86301 0.79083 0.83536 0.77813 1.21389 1.20459 1.21759 1.19206 0.93156 0.85092 1.42241 0.91533 1.42991 1.32376 1.00839 1.54500 1.20576 0.89962 0.91713 0.91311 1.22045 1.00339 0.97985 0.97800 1.20998 0.96516 0.98200 0.98095 1.21913 0.97816 0.97716 0.96553 0.91108 1.23638 0.92583 0.97884 0.88371 1.89141 1.60199 1.24296 1.57555 1.24512 1.01950 0.80683 0.97701 1.20466 0.95487 0.86131 0.91688 0.95225 0.93631 0.93586 0.93235 0.92519 0.92868 0.92157 0.93238 0.92636 0.90208 0.91674 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.78 10.78 55.49 0.60 -25.18 16 2 C 0.01 0.20 4.87 -17.43 -0.08 0.11 16 3 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.27 -7.26 8.71 -15.06 -0.13 -7.39 16 8 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 9 N -0.58 -14.56 3.01 -167.34 -0.50 -15.06 16 10 C 0.19 4.52 4.66 -4.40 -0.02 4.50 16 11 C -0.14 -2.71 6.09 -26.74 -0.16 -2.87 16 12 C -0.10 -1.72 5.30 -27.73 -0.15 -1.86 16 13 C -0.12 -2.17 3.18 -90.81 -0.29 -2.46 16 14 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 15 C 0.05 0.89 7.11 38.18 0.27 1.16 16 16 O -0.39 -7.85 11.70 -35.23 -0.41 -8.26 16 17 C 0.03 0.65 6.62 38.29 0.25 0.90 16 18 C 0.17 3.72 3.20 -68.63 -0.22 3.50 16 19 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 20 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 21 H 0.05 1.22 7.18 -51.93 -0.37 0.85 16 22 H 0.05 1.30 7.24 -51.93 -0.38 0.92 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.06 1.07 7.42 -51.93 -0.39 0.68 16 26 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 27 H 0.06 0.94 7.46 -51.93 -0.39 0.55 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 1.54 8.13 -51.93 -0.42 1.12 16 30 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 236.77 15.07 3.57 3.57 Total: -1.00 -28.70 236.77 -6.76 -35.46 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -4.45 Total: -2.74 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -0.53 Total: -4.41 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.10 Total: -40.24 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.41 Total: -8.26 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.70 -6.76 -35.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690705410.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.461 kcal (2) G-P(sol) polarization free energy of solvation -28.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds