Wall clock time and date at job start Mon Mar 30 2020 02:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00294 * 2 1 4 4 H 1.48499 * 109.47165 * 264.95375 * 3 2 1 5 5 H 1.48497 * 109.47019 * 144.95445 * 3 2 1 6 6 H 1.48500 * 109.47148 * 24.95548 * 3 2 1 7 7 C 1.38818 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99876 * 197.40967 * 7 2 1 9 9 N 1.36941 * 119.99651 * 17.40943 * 7 2 1 10 10 C 1.45571 * 117.16978 * 24.45903 * 9 7 2 11 11 C 1.53266 * 108.79239 * 153.97520 * 10 9 7 12 12 C 1.52718 * 107.76900 * 57.71818 * 11 10 9 13 13 C 1.51314 * 111.49519 * 294.37990 * 12 11 10 14 14 H 1.08996 * 109.55451 * 274.41789 * 13 12 11 15 15 C 1.54928 * 109.39872 * 154.35210 * 13 12 11 16 16 O 1.44725 * 104.28009 * 212.26579 * 15 13 12 17 17 C 1.44796 * 104.58090 * 41.67094 * 16 15 13 18 18 C 1.43707 * 117.16537 * 204.20383 * 9 7 2 19 19 H 1.08998 * 108.40390 * 301.24583 * 18 9 7 20 20 H 0.97008 * 119.99987 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.58792 * 273.76694 * 10 9 7 22 22 H 1.08997 * 109.58394 * 34.05233 * 10 9 7 23 23 H 1.09002 * 109.79893 * 177.28440 * 11 10 9 24 24 H 1.09004 * 109.80305 * 298.09286 * 11 10 9 25 25 H 1.09002 * 109.07496 * 54.90764 * 12 11 10 26 26 H 1.09008 * 109.07412 * 173.86172 * 12 11 10 27 27 H 1.08997 * 110.47260 * 330.96189 * 15 13 12 28 28 H 1.08994 * 110.46854 * 93.43853 * 15 13 12 29 29 H 1.09003 * 110.52676 * 76.40364 * 17 16 15 30 30 H 1.08995 * 110.52801 * 199.00971 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6044 1.9848 -1.3946 5 1 3.4904 1.4732 0.8040 6 1 1.3985 2.6811 0.5907 7 6 2.0102 -1.2022 0.0005 8 1 3.0531 -1.2235 0.2804 9 7 1.3725 -2.3611 -0.3538 10 6 0.2044 -2.2407 -1.2141 11 6 0.0358 -3.5438 -2.0031 12 6 -0.0940 -4.6848 -0.9963 13 6 1.1829 -4.8758 -0.2071 14 1 1.8615 -5.5233 -0.7623 15 6 0.8507 -5.5247 1.1600 16 8 1.8397 -4.9782 2.0643 17 6 1.9305 -3.5791 1.7028 18 6 1.9178 -3.5910 0.1514 19 1 2.9494 -3.6759 -0.1902 20 1 -0.4850 0.8401 -0.0004 21 1 -0.6820 -2.0656 -0.6044 22 1 0.3432 -1.4087 -1.9044 23 1 -0.8627 -3.4897 -2.6177 24 1 0.9074 -3.7070 -2.6370 25 1 -0.9086 -4.4610 -0.3074 26 1 -0.3239 -5.6068 -1.5304 27 1 -0.1534 -5.2465 1.4800 28 1 0.9440 -6.6090 1.0999 29 1 1.0733 -3.0279 2.0895 30 1 2.8600 -3.1479 2.0744 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690705410.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:46 Heat of formation + Delta-G solvation = -45.577601 kcal Electronic energy + Delta-G solvation = -13377.188223 eV Core-core repulsion = 11172.029340 eV Total energy + Delta-G solvation = -2205.158883 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.97656 -37.74560 -35.16801 -32.88187 -31.82394 -28.85925 -26.90018 -24.91603 -23.33287 -23.02364 -19.69845 -18.65552 -17.30336 -17.06969 -16.27030 -16.08341 -15.63620 -15.36814 -14.62410 -14.34377 -13.89099 -13.69364 -13.00946 -12.93366 -12.73971 -12.27542 -12.14575 -11.95637 -11.77730 -11.45066 -11.30392 -10.98479 -10.76185 -10.52036 -8.74931 -7.83157 -5.36579 1.45274 1.46727 1.54807 2.48382 3.05939 3.25559 3.67267 3.73412 3.88171 4.04337 4.27712 4.38480 4.47423 4.57665 4.62852 4.84695 4.93804 4.96974 5.03145 5.12081 5.19998 5.21368 5.36774 5.46946 5.66909 5.82702 5.89440 6.37650 7.18041 7.97853 8.23298 9.15255 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044769 B = 0.013492 C = 0.011318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.287089 B = 2074.848399 C = 2473.323029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.043 4.043 3 Si 0.964 3.036 4 H -0.284 1.284 5 H -0.271 1.271 6 H -0.294 1.294 7 C -0.277 4.277 8 H 0.064 0.936 9 N -0.595 5.595 10 C 0.195 3.805 11 C -0.133 4.133 12 C -0.096 4.096 13 C -0.119 4.119 14 H 0.096 0.904 15 C 0.051 3.949 16 O -0.399 6.399 17 C 0.041 3.959 18 C 0.160 3.840 19 H 0.026 0.974 20 H 0.249 0.751 21 H 0.013 0.987 22 H 0.016 0.984 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.121 0.879 29 H 0.035 0.965 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.342 -9.352 -2.068 9.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.239 4.239 3 Si 0.792 3.208 4 H -0.211 1.211 5 H -0.195 1.195 6 H -0.221 1.221 7 C -0.408 4.408 8 H 0.082 0.918 9 N -0.318 5.318 10 C 0.071 3.929 11 C -0.171 4.171 12 C -0.134 4.134 13 C -0.138 4.138 14 H 0.114 0.886 15 C -0.025 4.025 16 O -0.318 6.318 17 C -0.038 4.038 18 C 0.051 3.949 19 H 0.044 0.956 20 H 0.059 0.941 21 H 0.031 0.969 22 H 0.034 0.966 23 H 0.097 0.903 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.111 0.889 27 H 0.072 0.928 28 H 0.139 0.861 29 H 0.053 0.947 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.337 -9.399 -1.905 9.595 hybrid contribution 0.225 1.564 0.093 1.583 sum 0.561 -7.834 -1.811 8.060 Atomic orbital electron populations 1.70257 1.06469 1.25718 1.55095 1.25723 0.96021 1.01262 1.00916 0.85338 0.78037 0.79664 0.77753 1.21095 1.19545 1.22052 1.19481 0.93269 0.86395 1.41623 0.91802 1.43208 1.32304 1.01444 1.54889 1.20326 0.88360 0.93657 0.90607 1.21923 1.01637 0.95660 0.97870 1.20991 0.95652 0.99152 0.97583 1.21958 0.98438 0.95724 0.97652 0.88613 1.23877 0.91761 0.99968 0.86930 1.89133 1.61179 1.22939 1.58504 1.24209 1.00442 0.81635 0.97557 1.20661 0.95792 0.86804 0.91606 0.95646 0.94124 0.96875 0.96599 0.90297 0.92341 0.93132 0.88932 0.92772 0.86129 0.94706 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.81 10.78 21.65 0.23 -54.58 16 2 C -0.04 -2.41 4.87 84.86 0.41 -2.00 16 3 Si 0.96 45.21 29.59 68.60 2.03 47.24 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 7 C -0.28 -15.34 8.71 84.03 0.73 -14.60 16 8 H 0.06 3.49 7.89 -2.91 -0.02 3.46 16 9 N -0.60 -29.98 3.01 -683.35 -2.05 -32.04 16 10 C 0.20 9.49 4.66 86.64 0.40 9.89 16 11 C -0.13 -4.76 6.09 30.59 0.19 -4.57 16 12 C -0.10 -2.97 5.30 29.95 0.16 -2.81 16 13 C -0.12 -3.91 3.18 -10.92 -0.03 -3.94 16 14 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 15 C 0.05 1.57 7.11 72.64 0.52 2.08 16 16 O -0.40 -15.18 11.70 -148.98 -1.74 -16.92 16 17 C 0.04 1.74 6.62 72.72 0.48 2.22 16 18 C 0.16 6.81 3.20 46.01 0.15 6.96 16 19 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 20 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 21 H 0.01 0.73 7.18 -2.39 -0.02 0.71 16 22 H 0.02 0.85 7.24 -2.39 -0.02 0.83 16 23 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 24 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 25 H 0.05 1.67 7.42 -2.39 -0.02 1.65 16 26 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 27 H 0.05 1.69 7.46 -2.39 -0.02 1.67 16 28 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.03 1.69 8.13 -2.39 -0.02 1.67 16 30 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 Total: -1.00 -62.68 236.77 2.57 -60.11 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: 1.10 Total: 2.97 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 3.00 Total: -6.77 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -1.82 Total: -86.62 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -1.74 Total: -16.92 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -62.68 2.57 -60.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690705410.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.533 kcal (2) G-P(sol) polarization free energy of solvation -62.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds