Wall clock time and date at job start Mon Mar 30 2020 02:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46894 * 109.47515 * 179.97438 * 10 9 7 12 12 C 1.47737 * 111.00297 * 266.41424 * 11 10 9 13 13 C 1.52201 * 87.53582 * 222.32176 * 12 11 10 14 14 C 1.52713 * 122.25960 * 150.44195 * 13 12 11 15 15 O 1.44456 * 85.01900 * 148.80977 * 14 13 12 16 16 C 1.44460 * 93.65999 * 336.82365 * 15 14 13 17 17 C 1.47739 * 111.00457 * 170.00039 * 11 10 9 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 22 22 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 23 23 H 1.08999 * 113.53824 * 336.98453 * 12 11 10 24 24 H 1.09004 * 113.54404 * 107.65890 * 12 11 10 25 25 H 1.09000 * 113.94593 * 262.83352 * 14 13 12 26 26 H 1.09006 * 113.93805 * 34.79216 * 14 13 12 27 27 H 1.09002 * 113.94123 * 269.15552 * 16 15 14 28 28 H 1.09002 * 113.94491 * 137.20078 * 16 15 14 29 29 H 1.09004 * 113.54056 * 252.34331 * 17 11 10 30 30 H 1.09004 * 113.54096 * 23.00859 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 1.3211 -5.4356 1.3779 13 6 1.6676 -6.8208 0.8510 14 6 2.3356 -7.8812 1.7236 15 8 1.6021 -8.8276 0.9155 16 6 0.5976 -7.8627 0.5324 17 6 2.4221 -6.0721 -0.2383 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 2.8718 -3.6044 -0.8895 22 1 2.8718 -3.6044 0.8904 23 1 2.0502 -5.0449 2.0877 24 1 0.2947 -5.3499 1.7350 25 1 3.4171 -7.9386 1.6001 26 1 2.0235 -7.8556 2.7677 27 1 -0.2632 -7.8314 1.2004 28 1 0.3218 -7.9058 -0.5213 29 1 2.3130 -6.5165 -1.2276 30 1 3.4601 -5.8599 0.0181 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697143748.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:03 Heat of formation + Delta-G solvation = 21.462799 kcal Electronic energy + Delta-G solvation = -12376.716241 eV Core-core repulsion = 10174.464447 eV Total energy + Delta-G solvation = -2202.251793 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.21591 -37.90682 -33.42490 -31.11179 -28.22174 -26.66204 -25.85511 -25.07089 -22.40971 -20.19229 -18.37085 -16.51871 -16.13165 -16.02563 -15.79204 -14.72597 -14.48932 -14.00585 -13.49339 -12.85395 -12.37430 -12.25128 -11.99484 -11.37836 -11.06956 -10.82745 -10.73120 -10.57719 -10.15124 -9.81213 -9.71650 -9.37987 -9.07960 -8.38516 -8.32217 -6.00749 -4.03815 3.29959 3.37272 3.41049 3.63725 4.04706 4.33271 4.44062 4.66534 5.05682 5.26550 5.35082 5.47136 5.49841 5.57241 5.70361 5.81167 5.86032 5.93520 6.06484 6.09399 6.13293 6.32211 6.76420 7.01895 7.41342 7.73208 7.86530 8.05776 8.40817 9.03870 9.60113 11.10642 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.098525 B = 0.006428 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 284.124249 B = 4354.650277 C = 4454.223686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.033 3.967 10 C 0.028 3.972 11 N -0.468 5.468 12 C 0.011 3.989 13 C -0.164 4.164 14 C 0.050 3.950 15 O -0.386 6.386 16 C 0.070 3.930 17 C 0.024 3.976 18 H 0.260 0.740 19 H 0.015 0.985 20 H 0.024 0.976 21 H 0.060 0.940 22 H 0.032 0.968 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.553 -12.781 2.883 13.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.005 4.005 10 C -0.100 4.100 11 N -0.190 5.190 12 C -0.118 4.118 13 C -0.165 4.165 14 C -0.028 4.028 15 O -0.305 6.305 16 C -0.006 4.006 17 C -0.105 4.105 18 H 0.070 0.930 19 H 0.034 0.966 20 H 0.042 0.958 21 H 0.078 0.922 22 H 0.050 0.950 23 H 0.090 0.910 24 H 0.104 0.896 25 H 0.108 0.892 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.880 -12.768 2.359 13.299 hybrid contribution 1.164 1.249 0.576 1.802 sum 4.044 -11.518 2.936 12.556 Atomic orbital electron populations 1.69988 1.06052 1.26490 1.50648 1.25006 0.94835 0.99223 0.95280 0.86536 0.80046 0.83785 0.77620 1.19788 1.20942 1.20992 1.21244 0.92976 0.91116 1.50901 0.92782 1.18964 0.93808 0.89862 0.97825 1.22897 0.97229 0.90409 0.99455 1.69034 1.32633 1.01620 1.15711 1.23656 1.02706 0.92328 0.93084 1.24331 0.98318 0.94983 0.98861 1.23744 0.97870 0.85859 0.95295 1.89691 1.40642 1.33762 1.66407 1.23550 0.91524 0.83820 1.01712 1.23423 0.95987 0.92643 0.98452 0.93020 0.96641 0.95805 0.92169 0.94982 0.90958 0.89642 0.89247 0.89891 0.89712 0.88691 0.89714 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.87 5.30 -27.88 -0.15 0.73 16 10 C 0.03 0.59 4.75 -3.83 -0.02 0.57 16 11 N -0.47 -8.57 6.32 -244.79 -1.55 -10.12 16 12 C 0.01 0.18 7.55 -6.64 -0.05 0.13 16 13 C -0.16 -2.16 1.49 -155.63 -0.23 -2.39 16 14 C 0.05 0.56 9.05 37.00 0.33 0.90 16 15 O -0.39 -5.24 12.45 -35.23 -0.44 -5.68 16 16 C 0.07 0.87 9.05 37.00 0.33 1.20 16 17 C 0.02 0.35 7.52 -6.64 -0.05 0.30 16 18 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 19 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 20 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 22 H 0.03 0.66 7.31 -51.93 -0.38 0.28 16 23 H 0.07 1.09 7.42 -51.93 -0.39 0.70 16 24 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 25 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 0.96 7.91 -51.93 -0.41 0.55 16 LS Contribution 254.10 15.07 3.83 3.83 Total: -1.00 -31.16 254.10 -7.20 -38.36 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -4.52 Total: -4.37 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -0.24 Total: -12.28 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.81 Total: -36.55 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.44 Total: -5.68 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.16 -7.20 -38.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697143748.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.820 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds