Wall clock time and date at job start Mon Mar 30 2020 02:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46894 * 109.47515 * 179.97438 * 10 9 7 12 12 C 1.47737 * 111.00297 * 266.41424 * 11 10 9 13 13 C 1.52201 * 87.53582 * 222.32176 * 12 11 10 14 14 C 1.52713 * 122.25960 * 150.44195 * 13 12 11 15 15 O 1.44456 * 85.01900 * 148.80977 * 14 13 12 16 16 C 1.44460 * 93.65999 * 336.82365 * 15 14 13 17 17 C 1.47739 * 111.00457 * 170.00039 * 11 10 9 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 22 22 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 23 23 H 1.08999 * 113.53824 * 336.98453 * 12 11 10 24 24 H 1.09004 * 113.54404 * 107.65890 * 12 11 10 25 25 H 1.09000 * 113.94593 * 262.83352 * 14 13 12 26 26 H 1.09006 * 113.93805 * 34.79216 * 14 13 12 27 27 H 1.09002 * 113.94123 * 269.15552 * 16 15 14 28 28 H 1.09002 * 113.94491 * 137.20078 * 16 15 14 29 29 H 1.09004 * 113.54056 * 252.34331 * 17 11 10 30 30 H 1.09004 * 113.54096 * 23.00859 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 1.3211 -5.4356 1.3779 13 6 1.6676 -6.8208 0.8510 14 6 2.3356 -7.8812 1.7236 15 8 1.6021 -8.8276 0.9155 16 6 0.5976 -7.8627 0.5324 17 6 2.4221 -6.0721 -0.2383 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 2.8718 -3.6044 -0.8895 22 1 2.8718 -3.6044 0.8904 23 1 2.0502 -5.0449 2.0877 24 1 0.2947 -5.3499 1.7350 25 1 3.4171 -7.9386 1.6001 26 1 2.0235 -7.8556 2.7677 27 1 -0.2632 -7.8314 1.2004 28 1 0.3218 -7.9058 -0.5213 29 1 2.3130 -6.5165 -1.2276 30 1 3.4601 -5.8599 0.0181 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697143748.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:03 Heat of formation + Delta-G solvation = -2.051029 kcal Electronic energy + Delta-G solvation = -12377.735877 eV Core-core repulsion = 10174.464447 eV Total energy + Delta-G solvation = -2203.271429 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.31970 -39.12286 -35.50643 -32.92997 -29.73541 -27.58609 -27.10531 -26.75568 -24.09413 -21.89899 -19.40321 -18.58465 -17.23507 -17.13242 -17.00295 -16.52011 -16.00560 -15.35666 -14.96010 -14.25059 -14.10343 -13.61231 -13.43624 -13.12225 -12.87334 -12.45862 -12.21193 -11.94830 -11.61416 -11.51980 -11.35002 -11.02385 -10.58759 -10.57974 -9.74787 -8.22125 -6.34601 1.39412 1.40162 1.53434 2.38790 2.66466 2.93447 3.11189 3.26127 3.48648 4.00423 4.18318 4.33686 4.41245 4.44263 4.53620 4.61277 4.69000 4.72193 4.87378 4.95279 5.03580 5.10743 5.18516 5.32099 5.44356 5.71574 5.77893 6.10389 6.26381 6.83118 7.35252 8.90413 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.098525 B = 0.006428 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 284.124249 B = 4354.650277 C = 4454.223686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.040 3.960 10 C 0.045 3.955 11 N -0.497 5.497 12 C 0.008 3.992 13 C -0.155 4.155 14 C 0.057 3.943 15 O -0.404 6.404 16 C 0.069 3.931 17 C 0.026 3.974 18 H 0.264 0.736 19 H -0.012 1.012 20 H -0.012 1.012 21 H 0.060 0.940 22 H 0.040 0.960 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.985 -13.160 3.401 14.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.080 0.920 9 C 0.003 3.997 10 C -0.083 4.083 11 N -0.219 5.219 12 C -0.121 4.121 13 C -0.156 4.156 14 C -0.019 4.019 15 O -0.323 6.323 16 C -0.007 4.007 17 C -0.103 4.103 18 H 0.073 0.927 19 H 0.006 0.994 20 H 0.007 0.993 21 H 0.079 0.921 22 H 0.058 0.942 23 H 0.096 0.904 24 H 0.098 0.902 25 H 0.124 0.876 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.321 -13.168 2.879 14.155 hybrid contribution 0.669 1.323 0.414 1.539 sum 4.990 -11.845 3.293 13.269 Atomic orbital electron populations 1.70128 1.07965 1.27800 1.51449 1.26018 0.95764 1.03530 0.94540 0.85338 0.79036 0.78436 0.77843 1.18419 1.20355 1.20225 1.21677 0.93564 0.92248 1.50923 0.92004 1.18797 0.94140 0.92107 0.94703 1.22536 0.95741 0.90230 0.99775 1.68949 1.33683 1.01298 1.17984 1.23719 1.02658 0.93832 0.91867 1.24279 0.98796 0.94153 0.98328 1.23925 0.98670 0.83600 0.95718 1.89683 1.41167 1.34495 1.66987 1.23683 0.91733 0.82990 1.02289 1.23486 0.96258 0.91053 0.99478 0.92706 0.99388 0.99345 0.92140 0.94205 0.90431 0.90205 0.87610 0.87968 0.88288 0.88573 0.89244 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.85 13.29 21.45 0.28 -57.57 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.55 -31.53 9.11 25.60 0.23 -31.30 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.04 2.20 5.30 29.85 0.16 2.35 16 10 C 0.05 1.92 4.75 86.30 0.41 2.33 16 11 N -0.50 -18.04 6.32 -928.62 -5.87 -23.91 16 12 C 0.01 0.25 7.55 84.02 0.63 0.88 16 13 C -0.15 -3.77 1.49 -52.90 -0.08 -3.84 16 14 C 0.06 1.13 9.05 71.88 0.65 1.78 16 15 O -0.40 -9.97 12.45 -148.98 -1.86 -11.82 16 16 C 0.07 1.58 9.05 71.88 0.65 2.23 16 17 C 0.03 0.71 7.52 84.02 0.63 1.34 16 18 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 19 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 20 H -0.01 -0.73 8.14 -2.39 -0.02 -0.74 16 21 H 0.06 2.52 8.08 -2.39 -0.02 2.50 16 22 H 0.04 1.60 7.31 -2.39 -0.02 1.59 16 23 H 0.08 2.23 7.42 -2.39 -0.02 2.22 16 24 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 25 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.08 2.09 7.91 -2.38 -0.02 2.07 16 Total: -1.00 -67.03 254.10 -0.57 -67.59 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: 1.10 Total: 3.08 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 3.75 Total: -23.80 kcal Atomic # 7 Polarization: -75.89 SS G_CDS: -5.59 Total: -81.48 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -1.86 Total: -11.82 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -67.03 -0.57 -67.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697143748.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.540 kcal (2) G-P(sol) polarization free energy of solvation -67.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds