Wall clock time and date at job start Mon Mar 30 2020 01:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 N 1.40074 * 126.04120 * 90.02242 * 10 9 7 12 12 C 1.30827 * 108.34335 * 180.02562 * 11 10 9 13 13 C 1.39820 * 108.28336 * 359.97438 * 12 11 10 14 14 C 1.50705 * 126.07960 * 179.97438 * 13 12 11 15 15 N 1.46894 * 109.46955 * 259.97559 * 14 13 12 16 16 C 1.35139 * 126.03708 * 269.71280 * 10 9 7 17 17 O 1.35759 * 126.19056 * 359.97063 * 16 10 9 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.08000 * 125.85481 * 180.02562 * 12 11 10 22 22 H 1.08996 * 109.47445 * 19.97583 * 14 13 12 23 23 H 1.09005 * 109.46690 * 139.97808 * 14 13 12 24 24 H 1.00901 * 111.00150 * 180.02562 * 15 14 13 25 25 H 1.00900 * 111.00076 * 303.95479 * 15 14 13 26 26 H 0.96703 * 114.00235 * 90.02207 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 7 2.7379 -4.2444 1.1196 12 6 3.5484 -5.1895 0.7178 13 6 3.5581 -5.1940 -0.6804 14 6 4.3565 -6.1218 -1.5595 15 7 5.5607 -5.4288 -2.0365 16 6 2.7154 -4.2157 -1.1056 17 8 2.4409 -3.8995 -2.3971 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 4.1125 -5.8530 1.3565 22 1 4.6470 -7.0034 -0.9881 23 1 3.7499 -6.4254 -2.4127 24 1 6.1132 -6.0303 -2.6289 25 1 5.3202 -4.5733 -2.5142 26 1 3.0328 -3.2338 -2.7734 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702828506.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:34 Heat of formation + Delta-G solvation = 28.568099 kcal Electronic energy + Delta-G solvation = -12301.096771 eV Core-core repulsion = 9995.612743 eV Total energy + Delta-G solvation = -2305.484028 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.62381 -36.60744 -34.71778 -33.45959 -31.34695 -28.62751 -27.24260 -24.20089 -22.85690 -20.43886 -19.93239 -17.39823 -16.59321 -16.15881 -15.12113 -14.84657 -14.43393 -13.73341 -13.48968 -13.33328 -12.67798 -12.15331 -12.03312 -11.69243 -11.18282 -10.92348 -10.75860 -10.26704 -9.85179 -9.72680 -8.68500 -8.54261 -8.40681 -7.67611 -6.29894 -4.38158 2.46221 3.17366 3.25356 3.26982 3.29774 3.43202 4.24838 4.72084 4.98001 5.04395 5.30081 5.46993 5.76258 6.08924 6.26003 6.51811 6.86196 7.01267 7.22775 7.34200 7.39908 7.60636 7.66305 7.84211 8.20948 8.50882 8.69662 9.28585 10.78151 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.048021 B = 0.009673 C = 0.009233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.934221 B = 2893.910540 C = 3031.894531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.252 3.748 10 N -0.332 5.332 11 N -0.282 5.282 12 C 0.045 3.955 13 C -0.276 4.276 14 C 0.152 3.848 15 N -0.847 5.847 16 C 0.266 3.734 17 O -0.470 6.470 18 H 0.268 0.732 19 H 0.054 0.946 20 H 0.054 0.946 21 H 0.174 0.826 22 H 0.073 0.927 23 H 0.027 0.973 24 H 0.333 0.667 25 H 0.337 0.663 26 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.800 -7.624 -4.611 11.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.082 0.918 9 C 0.134 3.866 10 N -0.121 5.121 11 N -0.108 5.108 12 C -0.138 4.138 13 C -0.290 4.290 14 C 0.021 3.979 15 N -0.376 5.376 16 C 0.092 3.908 17 O -0.273 6.273 18 H 0.078 0.922 19 H 0.072 0.928 20 H 0.072 0.928 21 H 0.191 0.809 22 H 0.091 0.909 23 H 0.045 0.955 24 H 0.145 0.855 25 H 0.149 0.851 26 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 5.743 -7.158 -2.856 9.611 hybrid contribution 0.605 0.889 -1.756 2.059 sum 6.348 -6.269 -4.612 10.044 Atomic orbital electron populations 1.69938 1.06100 1.27647 1.49000 1.24948 0.94983 0.99520 0.94325 0.86277 0.79966 0.82395 0.77892 1.19546 1.20636 1.20532 1.21321 0.93682 0.89642 1.53205 0.91768 1.19730 0.86413 0.80469 0.99973 1.49893 1.34087 1.25935 1.02185 1.77451 1.14622 1.10495 1.08245 1.23307 0.99020 0.97984 0.93530 1.19437 1.07819 1.07063 0.94673 1.19773 0.88455 0.94233 0.95421 1.58801 1.22295 1.09450 1.47080 1.18557 0.96396 0.94918 0.80927 1.84756 1.60125 1.62561 1.19845 0.92229 0.92798 0.92786 0.80873 0.90863 0.95515 0.85487 0.85126 0.75076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 13.29 55.43 0.74 -24.53 15 2 C 0.07 1.80 5.46 -17.82 -0.10 1.71 15 3 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 15 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 7 C -0.54 -14.91 9.39 -34.44 -0.32 -15.24 15 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 15 9 C 0.25 6.61 6.14 -5.20 -0.03 6.58 15 10 N -0.33 -7.86 3.60 -62.67 -0.23 -8.09 15 11 N -0.28 -6.43 12.57 30.61 0.38 -6.05 15 12 C 0.05 0.86 11.95 -17.39 -0.21 0.65 15 13 C -0.28 -5.01 5.63 -104.85 -0.59 -5.60 15 14 C 0.15 2.14 7.24 -4.98 -0.04 2.10 15 15 N -0.85 -10.75 9.61 -11.41 -0.11 -10.86 15 16 C 0.27 5.47 7.92 -16.92 -0.13 5.34 15 17 O -0.47 -8.52 13.53 -18.99 -0.26 -8.78 15 18 H 0.27 7.13 8.31 -40.82 -0.34 6.79 15 19 H 0.05 1.50 8.14 -51.93 -0.42 1.08 15 20 H 0.05 1.45 8.13 -51.93 -0.42 1.03 15 21 H 0.17 2.58 8.06 -52.49 -0.42 2.16 15 22 H 0.07 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 15 24 H 0.33 3.28 9.08 -39.29 -0.36 2.93 15 25 H 0.34 4.21 8.99 -39.29 -0.35 3.85 15 26 H 0.39 5.52 9.06 45.56 0.41 5.93 15 LS Contribution 241.05 15.07 3.63 3.63 Total: -1.00 -31.11 241.05 -4.24 -35.34 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -1.95 Total: 7.83 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -1.42 Total: -4.46 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.79 Total: -49.53 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.26 Total: -8.78 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.11 -4.24 -35.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702828506.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.912 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds