Wall clock time and date at job start Mon Mar 30 2020 02:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36938 * 120.00060 * 2 1 4 4 H 1.08002 * 119.99625 * 200.35199 * 3 2 1 5 5 C 1.38812 * 120.00221 * 20.34767 * 3 2 1 6 6 N 1.31620 * 119.99489 * 14.93094 * 5 3 2 7 7 Si 1.86791 * 120.00199 * 194.93081 * 5 3 2 8 8 H 1.48503 * 109.47166 * 85.00527 * 7 5 3 9 9 H 1.48505 * 109.47312 * 205.00182 * 7 5 3 10 10 H 1.48495 * 109.47487 * 325.00845 * 7 5 3 11 11 C 1.46503 * 120.00294 * 179.97438 * 2 1 3 12 12 C 1.50703 * 109.47018 * 270.00123 * 11 2 1 13 13 N 1.31065 * 126.66325 * 269.67964 * 12 11 2 14 14 N 1.28835 * 107.99668 * 180.26073 * 13 12 11 15 15 N 1.28744 * 109.39638 * 0.02562 * 14 13 12 16 16 N 1.29017 * 108.80749 * 359.97438 * 15 14 13 17 17 C 1.46500 * 126.44077 * 179.97438 * 16 15 14 18 18 H 1.08997 * 109.47163 * 275.03027 * 1 2 3 19 19 H 1.09005 * 109.47402 * 35.03154 * 1 2 3 20 20 H 1.09005 * 109.47098 * 155.02806 * 1 2 3 21 21 H 0.97000 * 119.99680 * 179.97438 * 6 5 3 22 22 H 1.09002 * 109.47660 * 150.00051 * 11 2 1 23 23 H 1.08999 * 109.46987 * 29.99429 * 11 2 1 24 24 H 1.08996 * 109.47332 * 270.02919 * 17 16 15 25 25 H 1.08997 * 109.47014 * 30.02590 * 17 16 15 26 26 H 1.09003 * 109.47557 * 150.02648 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1791 1.2150 -0.3253 5 6 1.5206 2.3506 0.4180 6 7 0.3867 2.2837 1.0830 7 14 2.2832 4.0125 0.0367 8 1 1.8705 4.4465 -1.3222 9 1 1.8223 5.0097 1.0360 10 1 3.7631 3.9028 0.0930 11 6 2.1975 -1.2687 0.0006 12 6 2.4487 -1.7031 1.4216 13 7 3.4923 -1.4078 2.1574 14 7 3.3402 -1.9685 3.3073 15 7 2.2266 -2.6144 3.3241 16 7 1.6476 -2.4749 2.1796 17 6 0.3605 -3.0492 1.7797 18 1 -0.3633 0.0901 1.0237 19 1 -0.3634 0.8415 -0.5899 20 1 -0.3633 -0.9316 -0.4339 21 1 -0.0527 3.0976 1.3754 22 1 3.1500 -1.1387 -0.5133 23 1 1.6084 -2.0286 -0.5128 24 1 0.5232 -4.0309 1.3349 25 1 -0.2806 -3.1490 2.6556 26 1 -0.1187 -2.3952 1.0513 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702976050.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:31 Heat of formation + Delta-G solvation = 142.379154 kcal Electronic energy + Delta-G solvation = -12713.949691 eV Core-core repulsion = 10445.693632 eV Total energy + Delta-G solvation = -2268.256059 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.32631 -36.09093 -34.86333 -32.43345 -30.79677 -28.27123 -26.60400 -26.02067 -22.77810 -22.25565 -20.59981 -17.11006 -16.73839 -16.49191 -15.13308 -14.31085 -13.88446 -13.63913 -13.34781 -13.24634 -12.35203 -11.93251 -11.48895 -11.35709 -11.02378 -10.81669 -10.64360 -10.34064 -10.19997 -10.13981 -10.07715 -9.27061 -8.73886 -7.14084 -5.93093 -3.37981 1.96719 2.67946 3.05281 3.34423 3.40401 3.42794 4.38993 4.74348 4.85916 5.10931 5.30463 5.32779 5.38449 5.45270 5.99984 6.21281 6.29402 6.36159 6.50046 6.88772 7.07937 7.40919 7.69683 8.13931 8.99725 9.39384 9.59128 10.03197 11.12434 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.046298 B = 0.011972 C = 0.010849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.631308 B = 2338.244454 C = 2580.296559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.154 3.846 2 N -0.577 5.577 3 C -0.261 4.261 4 H 0.080 0.920 5 C 0.007 3.993 6 N -0.905 5.905 7 Si 0.914 3.086 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.275 1.275 11 C 0.215 3.785 12 C 0.189 3.811 13 N -0.309 5.309 14 N -0.091 5.091 15 N -0.127 5.127 16 N -0.317 5.317 17 C 0.085 3.915 18 H 0.030 0.970 19 H 0.056 0.944 20 H 0.004 0.996 21 H 0.256 0.744 22 H 0.091 0.909 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.630 -8.728 -3.462 9.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.298 5.298 3 C -0.390 4.390 4 H 0.098 0.902 5 C -0.193 4.193 6 N -0.548 5.548 7 Si 0.743 3.257 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.201 1.201 11 C 0.083 3.917 12 C -0.092 4.092 13 N -0.159 5.159 14 N -0.085 5.085 15 N -0.113 5.113 16 N -0.119 5.119 17 C -0.058 4.058 18 H 0.049 0.951 19 H 0.074 0.926 20 H 0.022 0.978 21 H 0.066 0.934 22 H 0.109 0.891 23 H 0.086 0.914 24 H 0.106 0.894 25 H 0.116 0.884 26 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.001 -8.596 -2.232 9.104 hybrid contribution -0.505 0.946 -0.484 1.177 sum -2.507 -7.650 -2.716 8.496 Atomic orbital electron populations 1.21014 0.81828 0.96358 0.99824 1.44387 1.02207 1.00277 1.82882 1.19350 0.97703 0.83894 1.38076 0.90194 1.25095 0.97660 0.99053 0.97443 1.70069 1.18681 1.27502 1.38548 0.86122 0.79066 0.82967 0.77565 1.21114 1.21657 1.20064 1.19897 0.98938 0.89118 0.83796 1.28744 0.86963 0.91458 1.02045 1.74938 1.21657 1.20317 0.98949 1.78428 1.08707 1.07177 1.14182 1.78637 1.05833 1.21511 1.05349 1.48323 1.18751 1.35234 1.09616 1.22242 0.80515 0.99783 1.03233 0.95128 0.92560 0.97798 0.93387 0.89140 0.91402 0.89396 0.88444 0.87806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.35 8.16 59.84 0.49 3.84 15 2 N -0.58 -13.39 2.91 -182.50 -0.53 -13.92 15 3 C -0.26 -6.90 9.68 -15.06 -0.15 -7.05 15 4 H 0.08 2.09 7.86 -52.49 -0.41 1.68 15 5 C 0.01 0.19 5.06 -17.43 -0.09 0.10 15 6 N -0.90 -25.64 10.66 55.49 0.59 -25.05 15 7 Si 0.91 21.65 29.58 -169.99 -5.03 16.62 15 8 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 11 C 0.22 4.06 5.84 -5.19 -0.03 4.03 15 12 C 0.19 3.91 7.72 -155.43 -1.20 2.71 15 13 N -0.31 -7.31 12.36 32.70 0.40 -6.90 15 14 N -0.09 -2.11 13.43 60.35 0.81 -1.30 15 15 N -0.13 -2.64 13.29 60.35 0.80 -1.84 15 16 N -0.32 -5.84 3.75 -65.03 -0.24 -6.08 15 17 C 0.08 1.03 11.09 59.85 0.66 1.69 15 18 H 0.03 0.74 7.40 -51.93 -0.38 0.36 15 19 H 0.06 1.34 7.21 -51.93 -0.37 0.97 15 20 H 0.00 0.06 7.03 -51.93 -0.37 -0.30 15 21 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 22 H 0.09 1.66 8.03 -51.93 -0.42 1.24 15 23 H 0.07 0.99 7.54 -51.93 -0.39 0.60 15 24 H 0.09 0.77 8.14 -51.93 -0.42 0.35 15 25 H 0.10 1.04 8.14 -51.93 -0.42 0.62 15 26 H 0.10 1.24 5.98 -51.93 -0.31 0.93 15 LS Contribution 230.49 15.07 3.47 3.47 Total: -1.00 -32.70 230.49 -2.67 -35.36 By element: Atomic # 1 Polarization: -3.06 SS G_CDS: -2.64 Total: -5.70 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -0.31 Total: 5.32 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 1.83 Total: -55.09 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -32.70 -2.67 -35.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702976050.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.743 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds