Wall clock time and date at job start Mon Mar 30 2020 02:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36938 * 120.00060 * 2 1 4 4 H 1.08002 * 119.99625 * 200.35199 * 3 2 1 5 5 C 1.38812 * 120.00221 * 20.34767 * 3 2 1 6 6 N 1.31620 * 119.99489 * 14.93094 * 5 3 2 7 7 Si 1.86791 * 120.00199 * 194.93081 * 5 3 2 8 8 H 1.48503 * 109.47166 * 85.00527 * 7 5 3 9 9 H 1.48505 * 109.47312 * 205.00182 * 7 5 3 10 10 H 1.48495 * 109.47487 * 325.00845 * 7 5 3 11 11 C 1.46503 * 120.00294 * 179.97438 * 2 1 3 12 12 C 1.50703 * 109.47018 * 270.00123 * 11 2 1 13 13 N 1.31065 * 126.66325 * 269.67964 * 12 11 2 14 14 N 1.28835 * 107.99668 * 180.26073 * 13 12 11 15 15 N 1.28744 * 109.39638 * 0.02562 * 14 13 12 16 16 N 1.29017 * 108.80749 * 359.97438 * 15 14 13 17 17 C 1.46500 * 126.44077 * 179.97438 * 16 15 14 18 18 H 1.08997 * 109.47163 * 275.03027 * 1 2 3 19 19 H 1.09005 * 109.47402 * 35.03154 * 1 2 3 20 20 H 1.09005 * 109.47098 * 155.02806 * 1 2 3 21 21 H 0.97000 * 119.99680 * 179.97438 * 6 5 3 22 22 H 1.09002 * 109.47660 * 150.00051 * 11 2 1 23 23 H 1.08999 * 109.46987 * 29.99429 * 11 2 1 24 24 H 1.08996 * 109.47332 * 270.02919 * 17 16 15 25 25 H 1.08997 * 109.47014 * 30.02590 * 17 16 15 26 26 H 1.09003 * 109.47557 * 150.02648 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1791 1.2150 -0.3253 5 6 1.5206 2.3506 0.4180 6 7 0.3867 2.2837 1.0830 7 14 2.2832 4.0125 0.0367 8 1 1.8705 4.4465 -1.3222 9 1 1.8223 5.0097 1.0360 10 1 3.7631 3.9028 0.0930 11 6 2.1975 -1.2687 0.0006 12 6 2.4487 -1.7031 1.4216 13 7 3.4923 -1.4078 2.1574 14 7 3.3402 -1.9685 3.3073 15 7 2.2266 -2.6144 3.3241 16 7 1.6476 -2.4749 2.1796 17 6 0.3605 -3.0492 1.7797 18 1 -0.3633 0.0901 1.0237 19 1 -0.3634 0.8415 -0.5899 20 1 -0.3633 -0.9316 -0.4339 21 1 -0.0527 3.0976 1.3754 22 1 3.1500 -1.1387 -0.5133 23 1 1.6084 -2.0286 -0.5128 24 1 0.5232 -4.0309 1.3349 25 1 -0.2806 -3.1490 2.6556 26 1 -0.1187 -2.3952 1.0513 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702976050.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:30 Heat of formation + Delta-G solvation = 118.657447 kcal Electronic energy + Delta-G solvation = -12714.978341 eV Core-core repulsion = 10445.693632 eV Total energy + Delta-G solvation = -2269.284709 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.93310 -37.82015 -36.36654 -34.21264 -32.61375 -29.59941 -28.12762 -27.91726 -24.46674 -23.89711 -22.23896 -18.91955 -18.21921 -18.07401 -16.95966 -15.98654 -15.57444 -15.33057 -14.72056 -14.46685 -14.06662 -13.36143 -13.15163 -13.04323 -12.84922 -12.56957 -12.33863 -12.05050 -11.99850 -11.95369 -11.64668 -10.89708 -10.71520 -9.03986 -7.93810 -5.40184 0.40658 1.31352 1.40670 1.47377 1.47952 1.55514 2.48092 3.17321 3.45885 3.50456 3.64019 4.07728 4.30572 4.52145 4.57072 4.65027 4.78942 4.82205 4.98516 5.30285 5.46430 5.59565 5.70445 6.22543 7.05361 7.71462 7.75260 8.09139 9.08953 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.046298 B = 0.011972 C = 0.010849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.631308 B = 2338.244454 C = 2580.296559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.166 3.834 2 N -0.593 5.593 3 C -0.263 4.263 4 H 0.076 0.924 5 C -0.048 4.048 6 N -0.934 5.934 7 Si 0.966 3.034 8 H -0.275 1.275 9 H -0.300 1.300 10 H -0.274 1.274 11 C 0.216 3.784 12 C 0.184 3.816 13 N -0.345 5.345 14 N -0.123 5.123 15 N -0.124 5.124 16 N -0.303 5.303 17 C 0.068 3.932 18 H 0.000 1.000 19 H 0.026 0.974 20 H 0.059 0.941 21 H 0.249 0.751 22 H 0.094 0.906 23 H 0.122 0.878 24 H 0.132 0.868 25 H 0.112 0.888 26 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 -10.284 -4.553 11.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.314 5.314 3 C -0.393 4.393 4 H 0.094 0.906 5 C -0.243 4.243 6 N -0.580 5.580 7 Si 0.795 3.205 8 H -0.201 1.201 9 H -0.227 1.227 10 H -0.199 1.199 11 C 0.085 3.915 12 C -0.098 4.098 13 N -0.196 5.196 14 N -0.117 5.117 15 N -0.111 5.111 16 N -0.106 5.106 17 C -0.071 4.071 18 H 0.018 0.982 19 H 0.045 0.955 20 H 0.078 0.922 21 H 0.058 0.942 22 H 0.112 0.888 23 H 0.140 0.860 24 H 0.150 0.850 25 H 0.131 0.869 26 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.551 -10.189 -3.342 11.023 hybrid contribution -0.367 1.253 -0.162 1.316 sum -2.918 -8.937 -3.504 10.033 Atomic orbital electron populations 1.20827 0.81180 0.97937 0.97907 1.44481 1.02860 1.00835 1.83183 1.19587 0.97553 0.85539 1.36638 0.90582 1.25750 0.98439 1.01882 0.98266 1.70219 1.19996 1.27411 1.40366 0.85289 0.78253 0.79621 0.77358 1.20106 1.22718 1.19891 1.20172 0.99798 0.88629 0.82902 1.28771 0.86876 0.91824 1.02326 1.74841 1.23810 1.21298 0.99626 1.78399 1.10048 1.08605 1.14665 1.78532 1.05405 1.20985 1.06221 1.48723 1.19692 1.33869 1.08287 1.22847 0.78051 1.01725 1.04463 0.98152 0.95537 0.92229 0.94228 0.88799 0.86010 0.84982 0.86922 0.87076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 6.89 8.16 127.77 1.04 7.93 15 2 N -0.59 -26.39 2.91 -731.30 -2.13 -28.52 15 3 C -0.26 -13.76 9.68 84.03 0.81 -12.95 15 4 H 0.08 3.95 7.86 -2.91 -0.02 3.93 15 5 C -0.05 -2.60 5.06 84.86 0.43 -2.17 15 6 N -0.93 -53.68 10.66 21.65 0.23 -53.44 15 7 Si 0.97 44.85 29.58 68.60 2.03 46.88 15 8 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 9 H -0.30 -14.29 7.11 99.48 0.71 -13.58 15 10 H -0.27 -12.46 7.11 99.48 0.71 -11.75 15 11 C 0.22 7.48 5.84 85.63 0.50 7.98 15 12 C 0.18 7.20 7.72 138.13 1.07 8.27 15 13 N -0.35 -16.13 12.36 -50.45 -0.62 -16.75 15 14 N -0.12 -5.67 13.43 37.01 0.50 -5.18 15 15 N -0.12 -4.98 13.29 37.02 0.49 -4.49 15 16 N -0.30 -10.29 3.75 -359.64 -1.35 -11.64 15 17 C 0.07 1.36 11.09 127.77 1.42 2.77 15 18 H 0.00 0.00 7.40 -2.39 -0.02 -0.01 15 19 H 0.03 1.23 7.21 -2.38 -0.02 1.21 15 20 H 0.06 1.77 7.03 -2.38 -0.02 1.76 15 21 H 0.25 14.06 8.31 -92.71 -0.77 13.29 15 22 H 0.09 3.20 8.03 -2.39 -0.02 3.18 15 23 H 0.12 2.88 7.54 -2.39 -0.02 2.87 15 24 H 0.13 1.54 8.14 -2.39 -0.02 1.52 15 25 H 0.11 1.96 8.14 -2.39 -0.02 1.94 15 26 H 0.11 2.11 5.98 -2.39 -0.01 2.09 15 Total: -1.00 -71.97 230.49 5.60 -66.36 By element: Atomic # 1 Polarization: -6.22 SS G_CDS: 1.19 Total: -5.04 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 5.27 Total: 11.82 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -2.88 Total: -120.02 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -71.97 5.60 -66.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702976050.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.022 kcal (2) G-P(sol) polarization free energy of solvation -71.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds