Wall clock time and date at job start Mon Mar 30 2020 02:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00254 * 2 1 4 4 H 1.48502 * 109.46777 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46879 * 239.99997 * 3 2 1 6 6 H 1.48496 * 109.47295 * 119.99610 * 3 2 1 7 7 C 1.38813 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00417 * 165.49843 * 7 2 1 9 9 N 1.36938 * 119.99708 * 345.49642 * 7 2 1 10 10 C 1.46502 * 120.00442 * 308.63722 * 9 7 2 11 11 C 1.53004 * 117.49350 * 3.08581 * 10 9 7 12 12 C 1.52999 * 117.49588 * 294.42690 * 10 9 7 13 13 C 1.46506 * 119.99875 * 128.63843 * 9 7 2 14 14 H 1.08996 * 112.84748 * 168.80353 * 13 9 7 15 15 C 1.53780 * 113.61366 * 37.49719 * 13 9 7 16 16 C 1.53775 * 87.08046 * 220.02105 * 15 13 9 17 17 C 1.53778 * 87.08438 * 25.43133 * 16 15 13 18 18 H 1.08997 * 113.61594 * 220.02284 * 17 16 15 19 19 O 1.42900 * 113.68903 * 89.12853 * 17 16 15 20 20 H 0.97003 * 120.00011 * 174.49396 * 1 2 3 21 21 H 1.08999 * 115.55059 * 148.75261 * 10 9 7 22 22 H 1.08998 * 117.50454 * 359.97438 * 11 10 9 23 23 H 1.09003 * 117.49623 * 145.02069 * 11 10 9 24 24 H 1.09002 * 117.49584 * 214.97632 * 12 10 9 25 25 H 1.08997 * 117.50271 * 359.97438 * 12 10 9 26 26 H 1.09005 * 113.61529 * 334.57073 * 15 13 9 27 27 H 1.08997 * 113.61326 * 105.47049 * 15 13 9 28 28 H 1.09004 * 113.61589 * 270.88352 * 16 15 13 29 29 H 1.09000 * 113.61722 * 139.98593 * 16 15 13 30 30 H 0.96697 * 114.00547 * 82.46752 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1040 1.6963 -1.2125 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0644 -1.2172 -0.2337 9 7 1.3582 -2.3690 0.2981 10 6 0.5493 -2.4663 1.5156 11 6 0.4137 -1.2083 2.3760 12 6 1.2787 -2.3759 2.8575 13 6 1.4697 -3.5202 -0.6012 14 1 1.0731 -4.4373 -0.1658 15 6 2.8673 -3.6845 -1.2212 16 6 2.1557 -4.0616 -2.5312 17 6 0.9572 -3.2421 -2.0242 18 1 -0.0077 -3.7015 -2.2383 19 8 1.0086 -1.8622 -2.3917 20 1 -0.4850 -0.8362 -0.0806 21 1 -0.3132 -3.1301 1.4552 22 1 0.9267 -0.3086 2.0364 23 1 -0.5378 -1.0448 2.8820 24 1 0.8959 -2.9800 3.6800 25 1 2.3605 -2.2445 2.8344 26 1 3.4301 -2.7530 -1.2824 27 1 3.4443 -4.5010 -0.7871 28 1 1.9478 -5.1276 -2.6241 29 1 2.6266 -3.6423 -3.4203 30 1 0.6877 -1.6809 -3.2856 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704034156.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:41 Heat of formation + Delta-G solvation = 12.731292 kcal Electronic energy + Delta-G solvation = -13470.668294 eV Core-core repulsion = 11268.037874 eV Total energy + Delta-G solvation = -2202.630420 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.30618 -38.21236 -35.28658 -34.08351 -31.70137 -26.57203 -25.54307 -24.67382 -22.81606 -21.64591 -20.48408 -18.53303 -17.99279 -16.84991 -16.23885 -15.68788 -15.41132 -15.30170 -14.37888 -13.98786 -13.48522 -13.25924 -12.79852 -12.64819 -12.18871 -11.97651 -11.93024 -11.74120 -11.44116 -11.13440 -11.00501 -10.63555 -10.27407 -9.91869 -8.46770 -7.70621 -5.37745 1.58880 1.65015 1.82038 2.70401 3.31352 3.38365 3.61110 3.77983 3.91347 4.03862 4.30506 4.33604 4.37191 4.57864 4.63241 4.74278 4.83324 4.96949 5.00620 5.09681 5.13936 5.42002 5.50714 5.63458 5.76375 6.23077 6.79827 7.21840 7.49863 8.00655 8.48577 9.28779 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.030428 B = 0.018858 C = 0.014054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.997825 B = 1484.456051 C = 1991.808410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.027 4.027 3 Si 1.092 2.908 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.320 4.320 8 H 0.016 0.984 9 N -0.556 5.556 10 C 0.105 3.895 11 C -0.175 4.175 12 C -0.211 4.211 13 C 0.142 3.858 14 H 0.096 0.904 15 C -0.140 4.140 16 C -0.152 4.152 17 C 0.057 3.943 18 H 0.050 0.950 19 O -0.523 6.523 20 H 0.259 0.741 21 H 0.090 0.910 22 H 0.089 0.911 23 H 0.076 0.924 24 H 0.098 0.902 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.656 -7.178 -2.135 7.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.228 4.228 3 Si 0.920 3.080 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.450 4.450 8 H 0.034 0.966 9 N -0.273 5.273 10 C -0.003 4.003 11 C -0.213 4.213 12 C -0.252 4.252 13 C 0.034 3.966 14 H 0.114 0.886 15 C -0.179 4.179 16 C -0.190 4.190 17 C -0.006 4.006 18 H 0.068 0.932 19 O -0.325 6.325 20 H 0.069 0.931 21 H 0.107 0.893 22 H 0.107 0.893 23 H 0.094 0.906 24 H 0.116 0.884 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.123 0.877 29 H 0.086 0.914 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.724 -5.458 -1.472 5.910 hybrid contribution -0.036 -1.501 -0.723 1.666 sum 1.688 -6.959 -2.195 7.490 Atomic orbital electron populations 1.70763 1.07016 1.29881 1.47837 1.26608 0.96925 1.03376 0.95880 0.83190 0.74231 0.73982 0.76610 1.21725 1.21283 1.21164 1.19137 0.90871 0.86591 1.48443 0.96642 1.43302 1.55513 1.10236 1.18207 1.21213 0.95416 0.99535 0.84092 1.23111 1.00092 0.94368 1.03723 1.23371 0.97754 1.03728 1.00315 1.22487 0.95499 0.90534 0.88066 0.88606 1.23142 0.97711 0.99968 0.97097 1.23351 0.97942 1.00683 0.97018 1.23587 0.95541 0.82727 0.98714 0.93217 1.87127 1.87452 1.23393 1.34555 0.93134 0.89264 0.89318 0.90591 0.88366 0.91506 0.92542 0.91778 0.87704 0.91440 0.79807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.07 11.88 21.65 0.26 -53.81 16 2 C -0.03 -1.49 2.82 84.86 0.24 -1.25 16 3 Si 1.09 52.38 29.80 68.60 2.04 54.42 16 4 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 5 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 6 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.32 -17.67 6.11 84.03 0.51 -17.15 16 8 H 0.02 0.94 6.56 -2.91 -0.02 0.92 16 9 N -0.56 -27.52 2.52 -651.33 -1.64 -29.17 16 10 C 0.11 4.90 5.47 44.99 0.25 5.15 16 11 C -0.17 -8.34 8.22 30.62 0.25 -8.09 16 12 C -0.21 -8.90 10.36 30.62 0.32 -8.58 16 13 C 0.14 5.87 4.43 45.52 0.20 6.07 16 14 H 0.10 3.50 8.08 -2.39 -0.02 3.48 16 15 C -0.14 -5.34 7.47 31.12 0.23 -5.11 16 16 C -0.15 -4.75 7.91 31.12 0.25 -4.51 16 17 C 0.06 2.17 5.21 31.12 0.16 2.33 16 18 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 19 O -0.52 -23.52 11.12 -148.98 -1.66 -25.17 16 20 H 0.26 15.70 7.07 -92.71 -0.66 15.05 16 21 H 0.09 3.85 8.14 -2.39 -0.02 3.83 16 22 H 0.09 4.86 4.94 -2.39 -0.01 4.85 16 23 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 24 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 25 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 26 H 0.06 2.58 6.25 -2.38 -0.01 2.56 16 27 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 28 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.36 12.84 9.12 -74.06 -0.68 12.17 16 Total: -1.00 -64.03 241.79 1.98 -62.05 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.57 Total: 22.82 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: 2.41 Total: -31.14 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -1.39 Total: -82.98 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -1.66 Total: -25.17 kcal Atomic # 14 Polarization: 52.38 SS G_CDS: 2.04 Total: 54.42 kcal Total: -64.03 1.98 -62.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704034156.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.777 kcal (2) G-P(sol) polarization free energy of solvation -64.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds