Wall clock time and date at job start Mon Mar 30 2020 02:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00052 * 2 1 4 4 H 1.48498 * 109.47021 * 270.71702 * 3 2 1 5 5 H 1.48497 * 109.47252 * 30.71799 * 3 2 1 6 6 H 1.48499 * 109.47187 * 150.72001 * 3 2 1 7 7 C 1.38818 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99219 * 344.51322 * 7 2 1 9 9 N 1.36933 * 119.99994 * 164.50615 * 7 2 1 10 10 C 1.46492 * 120.00330 * 303.57873 * 9 7 2 11 11 C 1.52995 * 117.50042 * 2.91072 * 10 9 7 12 12 C 1.52990 * 60.00379 * 252.51453 * 11 10 9 13 13 C 1.46507 * 119.99411 * 123.57911 * 9 7 2 14 14 H 1.08997 * 112.84683 * 189.13985 * 13 9 7 15 15 C 1.53777 * 113.69021 * 320.40384 * 13 9 7 16 16 C 1.53785 * 87.08091 * 89.13281 * 15 13 9 17 17 C 1.53774 * 113.61712 * 57.94182 * 13 9 7 18 18 H 1.08998 * 113.61539 * 156.25001 * 17 13 9 19 19 O 1.42901 * 113.61363 * 25.43293 * 17 13 9 20 20 H 0.97001 * 119.99652 * 0.02562 * 1 2 3 21 21 H 1.09001 * 115.55248 * 148.62532 * 10 9 7 22 22 H 1.09000 * 117.50045 * 0.02562 * 11 10 9 23 23 H 1.08996 * 117.50004 * 145.02022 * 11 10 9 24 24 H 1.09002 * 117.50297 * 252.50804 * 12 11 10 25 25 H 1.09001 * 117.50186 * 107.49023 * 12 11 10 26 26 H 1.09003 * 113.61721 * 203.67674 * 15 13 9 27 27 H 1.08999 * 113.62069 * 334.58628 * 15 13 9 28 28 H 1.09004 * 113.60906 * 270.88195 * 16 15 13 29 29 H 1.08996 * 113.61759 * 139.97753 * 16 15 13 30 30 H 0.96704 * 113.99813 * 179.97438 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4825 2.0552 -1.4000 5 1 1.4554 2.6483 0.7152 6 1 3.5553 1.4359 0.6847 7 6 2.0103 -1.2022 0.0005 8 1 1.4996 -2.1203 0.2507 9 7 3.3423 -1.2238 -0.3162 10 6 3.7993 -0.6818 -1.5982 11 6 2.7494 -0.0441 -2.5102 12 6 3.3511 -1.4038 -2.8705 13 6 4.3104 -1.7891 0.6270 14 1 5.3440 -1.6061 0.3333 15 6 4.0168 -1.4419 2.0960 16 6 3.1512 -2.7122 2.1413 17 6 4.0257 -3.2539 0.9982 18 1 4.9064 -3.7964 1.3418 19 8 3.2904 -3.9648 0.0002 20 1 -0.4850 0.8401 -0.0004 21 1 4.7966 -0.2419 -1.5939 22 1 1.7186 -0.0275 -2.1561 23 1 3.0557 0.8157 -3.1059 24 1 4.0533 -1.4386 -3.7034 25 1 2.7162 -2.2821 -2.7537 26 1 4.8952 -1.4890 2.7398 27 1 3.4476 -0.5209 2.2218 28 1 2.1131 -2.5435 1.8546 29 1 3.2489 -3.2744 3.0699 30 1 3.1086 -4.8869 0.2278 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704034163.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:43 Heat of formation + Delta-G solvation = 33.612674 kcal Electronic energy + Delta-G solvation = -13481.654502 eV Core-core repulsion = 11279.929567 eV Total energy + Delta-G solvation = -2201.724935 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.83600 -36.37836 -34.08552 -32.17082 -30.24402 -25.42738 -23.83616 -22.77578 -21.42984 -20.10778 -18.35119 -16.96805 -16.47503 -15.09036 -14.77508 -14.09757 -13.57686 -13.23224 -12.91803 -12.55396 -11.65037 -11.46156 -11.28674 -10.89723 -10.64286 -10.40018 -10.26942 -10.16705 -9.71397 -9.55123 -9.21604 -9.02722 -8.80488 -8.31004 -6.29181 -5.90496 -3.59701 3.43735 3.52000 3.59747 4.59029 4.79514 4.99111 5.12055 5.37847 5.56794 5.64325 5.78934 5.87939 5.96206 6.16240 6.16687 6.27715 6.43900 6.48809 6.63699 6.70395 6.94588 7.07477 7.17820 7.34472 7.42652 8.18549 8.47237 8.73729 9.13939 9.74687 10.26342 11.17078 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.032458 B = 0.019200 C = 0.015925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.443687 B = 1457.976251 C = 1757.779556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.052 3.948 3 Si 0.877 3.123 4 H -0.271 1.271 5 H -0.306 1.306 6 H -0.270 1.270 7 C -0.262 4.262 8 H 0.080 0.920 9 N -0.543 5.543 10 C 0.111 3.889 11 C -0.198 4.198 12 C -0.208 4.208 13 C 0.175 3.825 14 H 0.059 0.941 15 C -0.156 4.156 16 C -0.160 4.160 17 C 0.050 3.950 18 H 0.057 0.943 19 O -0.532 6.532 20 H 0.263 0.737 21 H 0.084 0.916 22 H 0.119 0.881 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.113 0.887 29 H 0.039 0.961 30 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.193 -3.244 1.032 8.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.149 4.149 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.234 1.234 6 H -0.195 1.195 7 C -0.391 4.391 8 H 0.097 0.903 9 N -0.260 5.260 10 C 0.004 3.996 11 C -0.235 4.235 12 C -0.248 4.248 13 C 0.066 3.934 14 H 0.077 0.923 15 C -0.195 4.195 16 C -0.197 4.197 17 C -0.011 4.011 18 H 0.075 0.925 19 O -0.333 6.333 20 H 0.073 0.927 21 H 0.102 0.898 22 H 0.137 0.863 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.132 0.868 29 H 0.058 0.942 30 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 8.058 -2.534 0.740 8.479 hybrid contribution 0.355 0.403 0.336 0.634 sum 8.413 -2.131 1.076 8.745 Atomic orbital electron populations 1.69863 1.06196 1.26821 1.51201 1.25909 0.94974 0.98305 0.95755 0.86899 0.80269 0.83951 0.78325 1.19736 1.23409 1.19456 1.18583 0.82835 0.93155 1.44546 0.90275 1.43066 1.03536 1.68348 1.11013 1.21244 0.94834 0.99910 0.83622 1.23474 1.01770 0.94744 1.03555 1.23322 1.04555 0.96569 1.00383 1.21500 0.92125 0.89971 0.89788 0.92257 1.23058 0.99026 0.99625 0.97771 1.23688 1.02666 0.96653 0.96696 1.24195 0.92886 0.94408 0.89647 0.92478 1.86824 1.76582 1.25610 1.44327 0.92737 0.89845 0.86290 0.90978 0.91391 0.88925 0.91762 0.90377 0.86847 0.94188 0.80473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.97 55.49 0.78 -26.21 16 2 C 0.05 1.47 3.74 -17.43 -0.07 1.40 16 3 Si 0.88 22.20 25.04 -169.99 -4.26 17.94 16 4 H -0.27 -6.64 5.88 56.52 0.33 -6.31 16 5 H -0.31 -7.94 7.11 56.52 0.40 -7.54 16 6 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.26 -7.13 6.38 -15.06 -0.10 -7.23 16 8 H 0.08 2.40 6.14 -52.49 -0.32 2.08 16 9 N -0.54 -12.98 1.93 -157.24 -0.30 -13.29 16 10 C 0.11 2.50 5.17 -67.94 -0.35 2.15 16 11 C -0.20 -4.51 6.78 -26.74 -0.18 -4.69 16 12 C -0.21 -4.42 10.36 -26.74 -0.28 -4.70 16 13 C 0.17 3.62 4.63 -67.12 -0.31 3.31 16 14 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 15 C -0.16 -3.03 7.44 -25.92 -0.19 -3.22 16 16 C -0.16 -3.08 7.34 -25.92 -0.19 -3.27 16 17 C 0.05 0.94 5.03 -25.92 -0.13 0.81 16 18 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 19 O -0.53 -10.60 12.48 -35.23 -0.44 -11.04 16 20 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 21 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 22 H 0.12 3.14 5.17 -51.93 -0.27 2.87 16 23 H 0.07 1.50 7.92 -51.93 -0.41 1.09 16 24 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 25 H 0.09 2.17 8.14 -51.93 -0.42 1.74 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.08 1.73 7.92 -51.93 -0.41 1.32 16 28 H 0.11 2.63 5.52 -51.93 -0.29 2.34 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.35 5.25 9.12 45.56 0.42 5.66 16 LS Contribution 237.39 15.07 3.58 3.58 Total: -1.00 -30.35 237.39 -5.89 -36.24 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -3.44 Total: 8.23 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -1.79 Total: -15.45 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.47 Total: -39.50 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.44 Total: -11.04 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.26 Total: 17.94 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.35 -5.89 -36.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704034163.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.852 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds