Wall clock time and date at job start Mon Mar 30 2020 02:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00052 * 2 1 4 4 H 1.48498 * 109.47021 * 270.71702 * 3 2 1 5 5 H 1.48497 * 109.47252 * 30.71799 * 3 2 1 6 6 H 1.48499 * 109.47187 * 150.72001 * 3 2 1 7 7 C 1.38818 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99219 * 344.51322 * 7 2 1 9 9 N 1.36933 * 119.99994 * 164.50615 * 7 2 1 10 10 C 1.46492 * 120.00330 * 303.57873 * 9 7 2 11 11 C 1.52995 * 117.50042 * 2.91072 * 10 9 7 12 12 C 1.52990 * 60.00379 * 252.51453 * 11 10 9 13 13 C 1.46507 * 119.99411 * 123.57911 * 9 7 2 14 14 H 1.08997 * 112.84683 * 189.13985 * 13 9 7 15 15 C 1.53777 * 113.69021 * 320.40384 * 13 9 7 16 16 C 1.53785 * 87.08091 * 89.13281 * 15 13 9 17 17 C 1.53774 * 113.61712 * 57.94182 * 13 9 7 18 18 H 1.08998 * 113.61539 * 156.25001 * 17 13 9 19 19 O 1.42901 * 113.61363 * 25.43293 * 17 13 9 20 20 H 0.97001 * 119.99652 * 0.02562 * 1 2 3 21 21 H 1.09001 * 115.55248 * 148.62532 * 10 9 7 22 22 H 1.09000 * 117.50045 * 0.02562 * 11 10 9 23 23 H 1.08996 * 117.50004 * 145.02022 * 11 10 9 24 24 H 1.09002 * 117.50297 * 252.50804 * 12 11 10 25 25 H 1.09001 * 117.50186 * 107.49023 * 12 11 10 26 26 H 1.09003 * 113.61721 * 203.67674 * 15 13 9 27 27 H 1.08999 * 113.62069 * 334.58628 * 15 13 9 28 28 H 1.09004 * 113.60906 * 270.88195 * 16 15 13 29 29 H 1.08996 * 113.61759 * 139.97753 * 16 15 13 30 30 H 0.96704 * 113.99813 * 179.97438 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4825 2.0552 -1.4000 5 1 1.4554 2.6483 0.7152 6 1 3.5553 1.4359 0.6847 7 6 2.0103 -1.2022 0.0005 8 1 1.4996 -2.1203 0.2507 9 7 3.3423 -1.2238 -0.3162 10 6 3.7993 -0.6818 -1.5982 11 6 2.7494 -0.0441 -2.5102 12 6 3.3511 -1.4038 -2.8705 13 6 4.3104 -1.7891 0.6270 14 1 5.3440 -1.6061 0.3333 15 6 4.0168 -1.4419 2.0960 16 6 3.1512 -2.7122 2.1413 17 6 4.0257 -3.2539 0.9982 18 1 4.9064 -3.7964 1.3418 19 8 3.2904 -3.9648 0.0002 20 1 -0.4850 0.8401 -0.0004 21 1 4.7966 -0.2419 -1.5939 22 1 1.7186 -0.0275 -2.1561 23 1 3.0557 0.8157 -3.1059 24 1 4.0533 -1.4386 -3.7034 25 1 2.7162 -2.2821 -2.7537 26 1 4.8952 -1.4890 2.7398 27 1 3.4476 -0.5209 2.2218 28 1 2.1131 -2.5435 1.8546 29 1 3.2489 -3.2744 3.0699 30 1 3.1086 -4.8869 0.2278 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704034163.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:43 Heat of formation + Delta-G solvation = 11.255608 kcal Electronic energy + Delta-G solvation = -13482.623977 eV Core-core repulsion = 11279.929567 eV Total energy + Delta-G solvation = -2202.694410 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.45107 -38.09700 -35.65260 -34.23170 -32.11417 -27.31928 -25.33394 -24.53286 -23.18478 -21.93270 -20.01512 -18.75755 -18.21039 -16.82260 -16.50255 -15.93507 -15.22154 -15.01847 -14.85986 -14.08703 -13.43636 -13.36505 -13.14838 -12.61475 -12.39155 -12.20383 -12.04619 -11.83232 -11.47735 -11.33817 -10.95813 -10.78256 -10.40275 -10.30076 -8.26595 -7.98543 -5.73703 1.42832 1.44891 1.57211 2.51303 3.07334 3.12655 3.39824 3.74001 4.05972 4.12487 4.26383 4.31082 4.35429 4.38463 4.58381 4.79800 4.85614 4.94743 5.02036 5.05677 5.33071 5.38619 5.49766 5.59765 5.78124 6.07860 6.53543 7.13402 7.28362 7.70912 8.22302 9.05388 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.032458 B = 0.019200 C = 0.015925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.443687 B = 1457.976251 C = 1757.779556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.004 3.996 3 Si 0.932 3.068 4 H -0.255 1.255 5 H -0.319 1.319 6 H -0.259 1.259 7 C -0.234 4.234 8 H 0.034 0.966 9 N -0.557 5.557 10 C 0.102 3.898 11 C -0.211 4.211 12 C -0.190 4.190 13 C 0.152 3.848 14 H 0.090 0.910 15 C -0.150 4.150 16 C -0.163 4.163 17 C 0.061 3.939 18 H 0.103 0.897 19 O -0.563 6.563 20 H 0.260 0.740 21 H 0.118 0.882 22 H 0.078 0.922 23 H 0.097 0.903 24 H 0.107 0.893 25 H 0.061 0.939 26 H 0.108 0.892 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.487 -3.359 0.932 12.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.193 4.193 3 Si 0.760 3.240 4 H -0.180 1.180 5 H -0.249 1.249 6 H -0.184 1.184 7 C -0.364 4.364 8 H 0.052 0.948 9 N -0.275 5.275 10 C -0.005 4.005 11 C -0.249 4.249 12 C -0.231 4.231 13 C 0.045 3.955 14 H 0.108 0.892 15 C -0.188 4.188 16 C -0.200 4.200 17 C 0.000 4.000 18 H 0.121 0.879 19 O -0.367 6.367 20 H 0.069 0.931 21 H 0.136 0.864 22 H 0.096 0.904 23 H 0.115 0.885 24 H 0.125 0.875 25 H 0.080 0.920 26 H 0.126 0.874 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 11.391 -2.681 0.639 11.720 hybrid contribution -0.665 0.289 0.372 0.815 sum 10.726 -2.393 1.011 11.036 Atomic orbital electron populations 1.69992 1.07965 1.27201 1.54429 1.26422 0.95301 1.01289 0.96262 0.86001 0.79077 0.80041 0.78910 1.18030 1.24865 1.18364 1.18206 0.84451 0.91316 1.42422 0.94810 1.43185 1.02819 1.68919 1.12571 1.21585 0.95884 1.00000 0.83028 1.23373 0.99888 0.96700 1.04910 1.23249 1.04129 0.94402 1.01299 1.21882 0.92650 0.91313 0.89669 0.89246 1.23092 1.00047 0.97711 0.97990 1.23520 1.00071 0.97759 0.98672 1.24190 0.93706 0.93731 0.88360 0.87928 1.86754 1.77142 1.27518 1.45309 0.93142 0.86434 0.90382 0.88515 0.87452 0.91991 0.87414 0.93870 0.91918 0.91237 0.78091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.91 13.97 21.65 0.30 -59.60 16 2 C 0.00 0.23 3.74 84.86 0.32 0.55 16 3 Si 0.93 46.22 25.04 68.60 1.72 47.93 16 4 H -0.26 -11.85 5.88 99.48 0.58 -11.27 16 5 H -0.32 -16.40 7.11 99.48 0.71 -15.70 16 6 H -0.26 -12.28 7.11 99.48 0.71 -11.58 16 7 C -0.23 -13.06 6.38 84.04 0.54 -12.53 16 8 H 0.03 2.20 6.14 -2.91 -0.02 2.18 16 9 N -0.56 -25.97 1.93 -651.38 -1.25 -27.23 16 10 C 0.10 4.30 5.17 44.99 0.23 4.53 16 11 C -0.21 -9.29 6.78 30.59 0.21 -9.09 16 12 C -0.19 -7.69 10.36 30.59 0.32 -7.38 16 13 C 0.15 5.83 4.63 45.51 0.21 6.04 16 14 H 0.09 2.90 8.07 -2.39 -0.02 2.88 16 15 C -0.15 -5.44 7.44 31.12 0.23 -5.21 16 16 C -0.16 -6.07 7.34 31.12 0.23 -5.84 16 17 C 0.06 2.09 5.03 31.12 0.16 2.25 16 18 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 19 O -0.56 -21.72 12.48 -148.98 -1.86 -23.58 16 20 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 21 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 22 H 0.08 4.17 5.17 -2.39 -0.01 4.15 16 23 H 0.10 3.74 7.92 -2.39 -0.02 3.73 16 24 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 25 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 26 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 27 H 0.04 1.87 7.92 -2.39 -0.02 1.85 16 28 H 0.06 3.02 5.52 -2.38 -0.01 3.00 16 29 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.37 10.59 9.12 -74.05 -0.68 9.92 16 Total: -1.00 -68.59 237.39 1.68 -66.91 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.34 Total: 22.24 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 2.44 Total: -26.67 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -0.95 Total: -86.83 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -1.86 Total: -23.58 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.72 Total: 47.93 kcal Total: -68.59 1.68 -66.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704034163.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.163 kcal (2) G-P(sol) polarization free energy of solvation -68.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds