Wall clock time and date at job start Mon Mar 30 2020 02:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00271 * 2 1 4 4 H 1.48493 * 109.47232 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47270 * 300.00715 * 3 2 1 6 6 H 1.48498 * 109.46642 * 60.00246 * 3 2 1 7 7 C 1.38813 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00490 * 168.04109 * 7 2 1 9 9 N 1.36936 * 119.99373 * 348.03775 * 7 2 1 10 10 C 1.46503 * 120.00172 * 307.87888 * 9 7 2 11 11 C 1.52993 * 117.49824 * 1.89204 * 10 9 7 12 12 C 1.52994 * 117.50070 * 293.26650 * 10 9 7 13 13 C 1.46502 * 119.99985 * 127.88305 * 9 7 2 14 14 H 1.08997 * 112.90749 * 171.74122 * 13 9 7 15 15 C 1.53786 * 113.61167 * 40.49222 * 13 9 7 16 16 C 1.53787 * 87.07890 * 220.02029 * 15 13 9 17 17 C 1.53778 * 87.08095 * 25.43476 * 16 15 13 18 18 H 1.08998 * 113.61918 * 89.11784 * 17 16 15 19 19 O 1.42897 * 113.61109 * 220.02077 * 17 16 15 20 20 H 0.97003 * 119.99604 * 355.28397 * 1 2 3 21 21 H 1.08998 * 115.54441 * 147.59918 * 10 9 7 22 22 H 1.08998 * 117.50342 * 359.97438 * 11 10 9 23 23 H 1.09003 * 117.49843 * 145.02046 * 11 10 9 24 24 H 1.09000 * 117.49884 * 214.98389 * 12 10 9 25 25 H 1.09003 * 117.49886 * 359.97438 * 12 10 9 26 26 H 1.08996 * 113.61450 * 105.47338 * 15 13 9 27 27 H 1.09000 * 113.61458 * 334.56989 * 15 13 9 28 28 H 1.09000 * 113.61141 * 139.98213 * 16 15 13 29 29 H 1.09003 * 113.61189 * 270.88015 * 16 15 13 30 30 H 0.96705 * 113.99988 * 280.48781 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3966 -1.2124 6 1 1.8915 2.3963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0726 -1.2123 -0.1943 9 7 1.3478 -2.3752 0.2448 10 6 0.5059 -2.5057 1.4366 11 6 0.3723 -1.2816 2.3446 12 6 1.2018 -2.4843 2.7989 13 6 1.4810 -3.4999 -0.6846 14 1 1.0258 -4.4164 -0.3095 15 6 2.9114 -3.6947 -1.2148 16 6 2.2784 -4.0028 -2.5821 17 6 1.0768 -3.1572 -2.1283 18 1 1.1723 -2.0984 -2.3688 19 8 -0.1859 -3.7036 -2.5141 20 1 -0.4850 0.8373 0.0691 21 1 -0.3669 -3.1494 1.3273 22 1 0.9112 -0.3793 2.0555 23 1 -0.5886 -1.1196 2.8329 24 1 0.7866 -3.1136 3.5861 25 1 2.2861 -2.3735 2.8085 26 1 3.4292 -4.5453 -0.7717 27 1 3.5084 -2.7828 -1.2056 28 1 2.8229 -3.5722 -3.4223 29 1 2.0411 -5.0570 -2.7257 30 1 -0.4247 -3.5301 -3.4350 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704034166.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:47 Heat of formation + Delta-G solvation = 22.891664 kcal Electronic energy + Delta-G solvation = -13202.458254 eV Core-core repulsion = 11000.268421 eV Total energy + Delta-G solvation = -2202.189833 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.54882 -36.29139 -34.07781 -32.20417 -30.11320 -25.04770 -23.78951 -22.95157 -20.92298 -19.84916 -18.73629 -16.78878 -16.15196 -15.38161 -14.56748 -14.11354 -13.61743 -13.27466 -12.83576 -12.08601 -11.64960 -11.41162 -11.03374 -10.94378 -10.76988 -10.59233 -10.36714 -10.12502 -10.04994 -9.33490 -9.23877 -8.99592 -8.72742 -8.18878 -6.34086 -5.71095 -3.60187 3.28843 3.38757 3.40753 4.39294 4.99475 5.23233 5.38791 5.46762 5.50154 5.65259 5.87273 6.04216 6.26994 6.30498 6.40794 6.53287 6.60286 6.62857 6.76093 6.78544 7.02571 7.11141 7.25182 7.34289 7.69528 7.81075 8.45751 8.59765 9.22808 9.72975 10.43447 11.16798 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.029909 B = 0.016085 C = 0.013228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.943875 B = 1740.297246 C = 2116.157735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.036 3.964 3 Si 0.885 3.115 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.280 4.280 8 H 0.058 0.942 9 N -0.537 5.537 10 C 0.148 3.852 11 C -0.149 4.149 12 C -0.246 4.246 13 C 0.174 3.826 14 H 0.076 0.924 15 C -0.148 4.148 16 C -0.176 4.176 17 C 0.064 3.936 18 H 0.090 0.910 19 O -0.564 6.564 20 H 0.254 0.746 21 H 0.077 0.923 22 H 0.107 0.893 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.301 -4.429 -1.983 5.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.168 4.168 3 Si 0.713 3.287 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.410 4.410 8 H 0.075 0.925 9 N -0.253 5.253 10 C 0.040 3.960 11 C -0.188 4.188 12 C -0.287 4.287 13 C 0.065 3.935 14 H 0.094 0.906 15 C -0.188 4.188 16 C -0.214 4.214 17 C 0.003 3.997 18 H 0.107 0.893 19 O -0.367 6.367 20 H 0.064 0.936 21 H 0.095 0.905 22 H 0.125 0.875 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 2.150 -4.477 -1.424 5.167 hybrid contribution 0.376 1.256 -0.557 1.425 sum 2.526 -3.221 -1.981 4.547 Atomic orbital electron populations 1.70159 1.05386 1.25841 1.48641 1.25550 0.95056 0.98710 0.97458 0.86550 0.80177 0.84434 0.77565 1.19793 1.21328 1.21115 1.18789 0.90724 0.83795 1.47698 0.92500 1.43160 1.52896 1.10412 1.18783 1.20685 0.93536 0.99264 0.82541 1.22920 0.98886 0.94388 1.02568 1.23512 0.98982 1.04682 1.01485 1.21925 0.92590 0.91388 0.87598 0.90583 1.23123 0.98853 1.01271 0.95513 1.23486 0.99955 1.00290 0.97703 1.24440 0.79863 0.96390 0.98968 0.89270 1.86528 1.39111 1.79526 1.31586 0.93557 0.90497 0.87517 0.91905 0.91770 0.90208 0.92555 0.89196 0.92455 0.90815 0.79599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.13 11.34 55.49 0.63 -23.50 16 2 C 0.04 0.96 3.21 -17.43 -0.06 0.90 16 3 Si 0.88 20.78 29.53 -169.99 -5.02 15.76 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.28 -7.38 7.32 -15.06 -0.11 -7.49 16 8 H 0.06 1.51 6.58 -52.49 -0.35 1.17 16 9 N -0.54 -13.43 2.88 -157.23 -0.45 -13.88 16 10 C 0.15 3.60 6.04 -67.93 -0.41 3.19 16 11 C -0.15 -3.58 8.26 -26.73 -0.22 -3.80 16 12 C -0.25 -5.35 10.38 -26.73 -0.28 -5.63 16 13 C 0.17 3.84 4.26 -67.11 -0.29 3.56 16 14 H 0.08 1.65 8.07 -51.93 -0.42 1.23 16 15 C -0.15 -2.84 7.56 -25.91 -0.20 -3.03 16 16 C -0.18 -3.06 7.91 -25.92 -0.21 -3.27 16 17 C 0.06 1.35 4.80 -25.92 -0.12 1.23 16 18 H 0.09 2.12 7.55 -51.93 -0.39 1.73 16 19 O -0.56 -11.43 13.67 -35.23 -0.48 -11.91 16 20 H 0.25 6.89 8.32 -40.82 -0.34 6.55 16 21 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 22 H 0.11 2.81 5.14 -51.93 -0.27 2.54 16 23 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 25 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.09 1.84 6.33 -51.93 -0.33 1.51 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.36 5.52 9.12 45.56 0.42 5.94 16 LS Contribution 246.59 15.07 3.72 3.72 Total: -1.00 -28.78 246.59 -6.93 -35.71 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -3.43 Total: 8.44 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -1.89 Total: -14.34 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.18 Total: -37.38 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -0.48 Total: -11.91 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.78 -6.93 -35.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704034166.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.600 kcal (2) G-P(sol) polarization free energy of solvation -28.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds