Wall clock time and date at job start Mon Mar 30 2020 02:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00271 * 2 1 4 4 H 1.48493 * 109.47232 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47270 * 300.00715 * 3 2 1 6 6 H 1.48498 * 109.46642 * 60.00246 * 3 2 1 7 7 C 1.38813 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00490 * 168.04109 * 7 2 1 9 9 N 1.36936 * 119.99373 * 348.03775 * 7 2 1 10 10 C 1.46503 * 120.00172 * 307.87888 * 9 7 2 11 11 C 1.52993 * 117.49824 * 1.89204 * 10 9 7 12 12 C 1.52994 * 117.50070 * 293.26650 * 10 9 7 13 13 C 1.46502 * 119.99985 * 127.88305 * 9 7 2 14 14 H 1.08997 * 112.90749 * 171.74122 * 13 9 7 15 15 C 1.53786 * 113.61167 * 40.49222 * 13 9 7 16 16 C 1.53787 * 87.07890 * 220.02029 * 15 13 9 17 17 C 1.53778 * 87.08095 * 25.43476 * 16 15 13 18 18 H 1.08998 * 113.61918 * 89.11784 * 17 16 15 19 19 O 1.42897 * 113.61109 * 220.02077 * 17 16 15 20 20 H 0.97003 * 119.99604 * 355.28397 * 1 2 3 21 21 H 1.08998 * 115.54441 * 147.59918 * 10 9 7 22 22 H 1.08998 * 117.50342 * 359.97438 * 11 10 9 23 23 H 1.09003 * 117.49843 * 145.02046 * 11 10 9 24 24 H 1.09000 * 117.49884 * 214.98389 * 12 10 9 25 25 H 1.09003 * 117.49886 * 359.97438 * 12 10 9 26 26 H 1.08996 * 113.61450 * 105.47338 * 15 13 9 27 27 H 1.09000 * 113.61458 * 334.56989 * 15 13 9 28 28 H 1.09000 * 113.61141 * 139.98213 * 16 15 13 29 29 H 1.09003 * 113.61189 * 270.88015 * 16 15 13 30 30 H 0.96705 * 113.99988 * 280.48781 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3966 -1.2124 6 1 1.8915 2.3963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0726 -1.2123 -0.1943 9 7 1.3478 -2.3752 0.2448 10 6 0.5059 -2.5057 1.4366 11 6 0.3723 -1.2816 2.3446 12 6 1.2018 -2.4843 2.7989 13 6 1.4810 -3.4999 -0.6846 14 1 1.0258 -4.4164 -0.3095 15 6 2.9114 -3.6947 -1.2148 16 6 2.2784 -4.0028 -2.5821 17 6 1.0768 -3.1572 -2.1283 18 1 1.1723 -2.0984 -2.3688 19 8 -0.1859 -3.7036 -2.5141 20 1 -0.4850 0.8373 0.0691 21 1 -0.3669 -3.1494 1.3273 22 1 0.9112 -0.3793 2.0555 23 1 -0.5886 -1.1196 2.8329 24 1 0.7866 -3.1136 3.5861 25 1 2.2861 -2.3735 2.8085 26 1 3.4292 -4.5453 -0.7717 27 1 3.5084 -2.7828 -1.2056 28 1 2.8229 -3.5722 -3.4223 29 1 2.0411 -5.0570 -2.7257 30 1 -0.4247 -3.5301 -3.4350 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704034166.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:47 Heat of formation + Delta-G solvation = 3.574795 kcal Electronic energy + Delta-G solvation = -13203.295896 eV Core-core repulsion = 11000.268421 eV Total energy + Delta-G solvation = -2203.027475 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.20454 -38.09958 -35.69754 -34.16304 -31.97360 -26.96761 -25.37727 -24.64430 -22.74654 -21.76503 -20.38987 -18.42502 -18.09238 -17.13701 -16.49845 -15.82974 -15.29847 -15.07987 -14.50964 -13.84138 -13.40563 -13.23319 -12.91471 -12.61664 -12.50184 -12.31443 -12.04766 -11.92525 -11.91623 -11.10999 -10.95297 -10.69850 -10.45485 -10.18406 -8.32041 -7.67675 -5.63614 1.40878 1.45988 1.53961 2.45639 3.23225 3.37760 3.59122 3.80709 3.92043 4.08184 4.30619 4.38776 4.43875 4.70900 4.74347 4.87955 4.91409 5.03260 5.07709 5.16316 5.19974 5.47550 5.52056 5.67501 5.72111 5.79667 6.56274 7.05931 7.25533 7.81598 8.46775 9.14555 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.029909 B = 0.016085 C = 0.013228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.943875 B = 1740.297246 C = 2116.157735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C -0.002 4.002 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.278 4.278 8 H 0.052 0.948 9 N -0.553 5.553 10 C 0.126 3.874 11 C -0.159 4.159 12 C -0.213 4.213 13 C 0.153 3.847 14 H 0.078 0.922 15 C -0.139 4.139 16 C -0.148 4.148 17 C 0.061 3.939 18 H 0.054 0.946 19 O -0.579 6.579 20 H 0.250 0.750 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.070 0.930 24 H 0.096 0.904 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.213 -5.409 -2.152 6.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.203 4.203 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.409 4.409 8 H 0.070 0.930 9 N -0.269 5.269 10 C 0.017 3.983 11 C -0.197 4.197 12 C -0.254 4.254 13 C 0.046 3.954 14 H 0.096 0.904 15 C -0.179 4.179 16 C -0.187 4.187 17 C 0.000 4.000 18 H 0.072 0.928 19 O -0.385 6.385 20 H 0.059 0.941 21 H 0.092 0.908 22 H 0.100 0.900 23 H 0.088 0.912 24 H 0.114 0.886 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.114 0.886 30 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 3.078 -5.473 -1.610 6.482 hybrid contribution 0.051 1.502 -0.515 1.589 sum 3.129 -3.971 -2.125 5.484 Atomic orbital electron populations 1.70270 1.06608 1.26055 1.50374 1.26071 0.95571 1.01144 0.97523 0.85686 0.79417 0.81155 0.77048 1.19048 1.21603 1.21332 1.18885 0.90590 0.84646 1.46769 0.93037 1.43336 1.52982 1.10789 1.19830 1.20821 0.94233 0.99615 0.83586 1.22795 0.99540 0.93884 1.03504 1.23444 0.98339 1.03037 1.00561 1.22270 0.94864 0.90583 0.87721 0.90399 1.23001 0.97015 1.01368 0.96469 1.23340 0.97178 1.00825 0.97315 1.24230 0.81610 0.95294 0.98883 0.92816 1.86468 1.39100 1.79311 1.33641 0.94067 0.90805 0.90012 0.91179 0.88615 0.90800 0.90331 0.90903 0.90592 0.88642 0.77222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.84 11.34 21.65 0.25 -50.60 16 2 C 0.00 -0.12 3.21 84.86 0.27 0.15 16 3 Si 0.94 43.12 29.53 68.60 2.03 45.15 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 7 C -0.28 -14.73 7.32 84.03 0.62 -14.11 16 8 H 0.05 2.75 6.58 -2.92 -0.02 2.73 16 9 N -0.55 -27.59 2.88 -651.36 -1.87 -29.47 16 10 C 0.13 6.06 6.04 44.99 0.27 6.33 16 11 C -0.16 -7.57 8.26 30.59 0.25 -7.32 16 12 C -0.21 -8.94 10.38 30.59 0.32 -8.62 16 13 C 0.15 6.64 4.26 45.52 0.19 6.84 16 14 H 0.08 3.30 8.07 -2.39 -0.02 3.28 16 15 C -0.14 -5.05 7.56 31.12 0.24 -4.81 16 16 C -0.15 -4.74 7.91 31.12 0.25 -4.49 16 17 C 0.06 2.50 4.80 31.12 0.15 2.65 16 18 H 0.05 2.59 7.55 -2.39 -0.02 2.57 16 19 O -0.58 -22.79 13.67 -148.98 -2.04 -24.83 16 20 H 0.25 13.84 8.32 -92.71 -0.77 13.06 16 21 H 0.07 3.54 8.14 -2.39 -0.02 3.52 16 22 H 0.08 4.34 5.14 -2.39 -0.01 4.32 16 23 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 24 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 25 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 26 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.07 2.90 6.33 -2.39 -0.02 2.88 16 28 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.38 11.15 9.12 -74.05 -0.68 10.48 16 Total: -1.00 -60.80 246.59 1.37 -59.43 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.45 Total: 23.70 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 2.55 Total: -23.39 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -1.63 Total: -80.06 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -2.04 Total: -24.83 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -60.80 1.37 -59.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704034166.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.009 kcal (2) G-P(sol) polarization free energy of solvation -60.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds