Wall clock time and date at job start Mon Mar 30 2020 02:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46503 * 109.46672 * 2 1 4 4 C 1.35310 * 125.86801 * 125.32835 * 3 2 1 5 5 C 1.35348 * 106.17503 * 180.10838 * 4 3 2 6 6 C 1.50700 * 126.75241 * 179.84708 * 5 4 3 7 7 H 1.08994 * 109.47551 * 244.71612 * 6 5 4 8 8 O 1.42899 * 109.47136 * 4.71917 * 6 5 4 9 9 C 1.50702 * 109.46869 * 124.71667 * 6 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 6 5 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 6 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 6 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 N 1.33770 * 106.49624 * 359.59617 * 5 4 3 18 18 N 1.28632 * 108.88455 * 0.25241 * 17 5 4 19 19 H 1.08996 * 109.46598 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.46830 * 300.00236 * 1 2 3 21 21 H 1.08992 * 109.47198 * 60.00245 * 1 2 3 22 22 H 1.08989 * 109.47010 * 239.99659 * 2 1 3 23 23 H 1.08998 * 109.47091 * 119.99333 * 2 1 3 24 24 H 1.08000 * 126.91429 * 359.96633 * 4 3 2 25 25 H 0.96699 * 113.99712 * 59.99989 * 8 6 5 26 26 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8803 1.9175 0.8946 5 6 3.0545 3.2075 0.5239 6 6 3.9239 4.2322 1.2059 7 1 3.2987 5.0292 1.6083 8 8 4.6470 3.6107 2.2703 9 6 4.8951 4.8102 0.2091 10 1 4.8837 4.4700 -0.8158 11 6 5.7943 5.7781 0.6042 12 7 6.6382 6.2864 -0.2670 13 14 5.8136 6.3671 2.3768 14 1 6.7495 5.5276 3.1671 15 1 6.2592 7.7830 2.4230 16 1 4.4477 6.2590 2.9493 17 7 2.3073 3.3925 -0.5702 18 7 1.7061 2.2915 -0.8548 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 1.8933 -0.5138 -0.8899 23 1 1.8934 -0.5137 0.8900 24 1 3.3358 1.4174 1.7365 25 1 5.2255 2.8904 1.9847 26 1 7.2710 6.9670 0.0111 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714414686.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:28 Heat of formation + Delta-G solvation = 47.832286 kcal Electronic energy + Delta-G solvation = -12331.956617 eV Core-core repulsion = 10027.307947 eV Total energy + Delta-G solvation = -2304.648670 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.63139 -36.36577 -34.98481 -32.26484 -30.59526 -30.51661 -27.32318 -24.41549 -23.12217 -21.09420 -20.06378 -17.50729 -17.02776 -15.94005 -15.03972 -14.68345 -14.31819 -14.19740 -13.39459 -12.90987 -12.78411 -12.34111 -11.91108 -11.69499 -11.35686 -10.91493 -10.77303 -10.20042 -10.00112 -9.50203 -9.33788 -9.00896 -8.62575 -8.21616 -6.08567 -4.19888 2.13591 2.74156 3.31426 3.46903 3.49779 3.61649 4.46740 4.51257 4.74117 4.95061 4.97635 5.17162 5.38546 5.46423 5.60244 5.74517 5.88532 5.94379 6.33022 6.82929 7.08635 7.20329 7.52420 8.30835 8.74807 9.01378 9.19927 9.51759 11.01962 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.073694 B = 0.009371 C = 0.008782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.856442 B = 2987.160585 C = 3187.413388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.116 3.884 3 N -0.303 5.303 4 C -0.068 4.068 5 C 0.000 4.000 6 C 0.267 3.733 7 H 0.082 0.918 8 O -0.580 6.580 9 C -0.545 4.545 10 H 0.078 0.922 11 C 0.082 3.918 12 N -0.890 5.890 13 Si 0.912 3.088 14 H -0.278 1.278 15 H -0.304 1.304 16 H -0.267 1.267 17 N -0.251 5.251 18 N -0.104 5.104 19 H 0.077 0.923 20 H 0.062 0.938 21 H 0.073 0.927 22 H 0.093 0.907 23 H 0.100 0.900 24 H 0.185 0.815 25 H 0.363 0.637 26 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.359 -13.135 4.318 16.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.006 4.006 3 N -0.099 5.099 4 C -0.218 4.218 5 C -0.138 4.138 6 C 0.208 3.792 7 H 0.099 0.901 8 O -0.386 6.386 9 C -0.583 4.583 10 H 0.096 0.904 11 C -0.123 4.123 12 N -0.527 5.527 13 Si 0.741 3.259 14 H -0.204 1.204 15 H -0.232 1.232 16 H -0.192 1.192 17 N -0.119 5.119 18 N -0.083 5.083 19 H 0.096 0.904 20 H 0.081 0.919 21 H 0.093 0.907 22 H 0.111 0.889 23 H 0.118 0.882 24 H 0.202 0.798 25 H 0.210 0.790 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.379 -12.273 3.386 15.813 hybrid contribution 1.023 -0.549 1.366 1.793 sum -8.355 -12.822 4.752 16.025 Atomic orbital electron populations 1.22059 0.93208 1.03102 1.03991 1.21911 0.96505 0.77550 1.04592 1.47314 1.31392 1.11520 1.19679 1.23246 1.01698 0.96341 1.00481 1.23323 1.00344 0.95142 0.95007 1.18267 0.88810 0.86994 0.85132 0.90102 1.86430 1.60878 1.53122 1.38129 1.21363 1.16880 1.22789 0.97280 0.90370 1.25021 0.94341 0.94777 0.98131 1.69950 1.20241 1.27648 1.34824 0.86280 0.79198 0.76020 0.84355 1.20382 1.23155 1.19196 1.75067 1.08674 1.14943 1.13194 1.78187 1.21714 0.93335 1.15095 0.90382 0.91868 0.90745 0.88914 0.88186 0.79796 0.78979 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.04 37.16 0.37 -1.08 15 2 C 0.12 1.15 7.18 -4.04 -0.03 1.12 15 3 N -0.30 -4.90 3.44 -61.26 -0.21 -5.12 15 4 C -0.07 -1.19 10.78 -17.05 -0.18 -1.38 15 5 C 0.00 0.00 6.39 -82.78 -0.53 -0.53 15 6 C 0.27 6.52 2.86 -29.03 -0.08 6.44 15 7 H 0.08 2.06 7.19 -51.93 -0.37 1.69 15 8 O -0.58 -12.67 10.52 -35.23 -0.37 -13.04 15 9 C -0.55 -15.71 9.32 -34.44 -0.32 -16.03 15 10 H 0.08 2.51 7.98 -52.49 -0.42 2.09 15 11 C 0.08 2.39 5.47 -17.82 -0.10 2.29 15 12 N -0.89 -27.47 13.96 55.43 0.77 -26.69 15 13 Si 0.91 23.01 26.18 -169.99 -4.45 18.56 15 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 15 H -0.30 -7.63 7.11 56.52 0.40 -7.23 15 16 H -0.27 -6.63 6.54 56.52 0.37 -6.26 15 17 N -0.25 -5.95 12.40 33.29 0.41 -5.54 15 18 N -0.10 -2.11 12.91 60.35 0.78 -1.33 15 19 H 0.08 0.45 8.14 -51.93 -0.42 0.03 15 20 H 0.06 0.60 8.14 -51.93 -0.42 0.18 15 21 H 0.07 0.77 8.12 -51.93 -0.42 0.35 15 22 H 0.09 0.81 8.14 -51.94 -0.42 0.38 15 23 H 0.10 0.70 8.07 -51.93 -0.42 0.28 15 24 H 0.18 2.48 7.94 -52.49 -0.42 2.07 15 25 H 0.36 6.78 8.85 45.56 0.40 7.18 15 26 H 0.27 7.65 8.31 -40.82 -0.34 7.32 15 LS Contribution 233.08 15.07 3.51 3.51 Total: -1.00 -34.70 233.08 -2.51 -37.21 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -2.08 Total: 1.60 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -0.87 Total: -9.16 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 1.75 Total: -38.68 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.37 Total: -13.04 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.45 Total: 18.56 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -34.70 -2.51 -37.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714414686.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.040 kcal (2) G-P(sol) polarization free energy of solvation -34.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds