Wall clock time and date at job start Mon Mar 30 2020 02:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46503 * 109.46672 * 2 1 4 4 C 1.35310 * 125.86801 * 125.32835 * 3 2 1 5 5 C 1.35348 * 106.17503 * 180.10838 * 4 3 2 6 6 C 1.50700 * 126.75241 * 179.84708 * 5 4 3 7 7 H 1.08994 * 109.47551 * 244.71612 * 6 5 4 8 8 O 1.42899 * 109.47136 * 4.71917 * 6 5 4 9 9 C 1.50702 * 109.46869 * 124.71667 * 6 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 6 5 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 6 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 6 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 N 1.33770 * 106.49624 * 359.59617 * 5 4 3 18 18 N 1.28632 * 108.88455 * 0.25241 * 17 5 4 19 19 H 1.08996 * 109.46598 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.46830 * 300.00236 * 1 2 3 21 21 H 1.08992 * 109.47198 * 60.00245 * 1 2 3 22 22 H 1.08989 * 109.47010 * 239.99659 * 2 1 3 23 23 H 1.08998 * 109.47091 * 119.99333 * 2 1 3 24 24 H 1.08000 * 126.91429 * 359.96633 * 4 3 2 25 25 H 0.96699 * 113.99712 * 59.99989 * 8 6 5 26 26 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8803 1.9175 0.8946 5 6 3.0545 3.2075 0.5239 6 6 3.9239 4.2322 1.2059 7 1 3.2987 5.0292 1.6083 8 8 4.6470 3.6107 2.2703 9 6 4.8951 4.8102 0.2091 10 1 4.8837 4.4700 -0.8158 11 6 5.7943 5.7781 0.6042 12 7 6.6382 6.2864 -0.2670 13 14 5.8136 6.3671 2.3768 14 1 6.7495 5.5276 3.1671 15 1 6.2592 7.7830 2.4230 16 1 4.4477 6.2590 2.9493 17 7 2.3073 3.3925 -0.5702 18 7 1.7061 2.2915 -0.8548 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 1.8933 -0.5138 -0.8899 23 1 1.8934 -0.5137 0.8900 24 1 3.3358 1.4174 1.7365 25 1 5.2255 2.8904 1.9847 26 1 7.2710 6.9670 0.0111 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714414686.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:28 Heat of formation + Delta-G solvation = 18.808405 kcal Electronic energy + Delta-G solvation = -12333.215187 eV Core-core repulsion = 10027.307947 eV Total energy + Delta-G solvation = -2305.907240 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.09580 -38.13819 -36.17755 -34.46189 -32.15391 -31.66509 -29.26206 -25.49397 -25.00029 -22.50351 -21.58390 -19.50002 -18.39393 -17.25289 -16.92391 -16.42763 -15.88868 -15.20240 -15.10870 -14.81530 -13.95327 -13.57517 -13.35467 -13.07209 -12.77185 -12.73748 -12.30771 -11.95755 -11.59784 -11.44927 -10.95830 -10.84228 -10.74351 -9.89138 -8.33107 -6.49427 0.74790 1.45813 1.49248 1.61988 1.63309 1.68347 2.41016 2.96904 3.49537 3.71416 3.98372 4.01512 4.14496 4.31354 4.41728 4.65692 4.77116 4.96637 5.15217 5.24571 5.32625 5.45746 5.85369 6.12041 6.63097 7.07898 7.28254 7.67304 8.82113 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.073694 B = 0.009371 C = 0.008782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.856442 B = 2987.160585 C = 3187.413388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.100 3.900 3 N -0.286 5.286 4 C -0.036 4.036 5 C -0.044 4.044 6 C 0.283 3.717 7 H 0.067 0.933 8 O -0.570 6.570 9 C -0.551 4.551 10 H 0.027 0.973 11 C 0.028 3.972 12 N -0.939 5.939 13 Si 0.982 3.018 14 H -0.262 1.262 15 H -0.303 1.303 16 H -0.259 1.259 17 N -0.307 5.307 18 N -0.122 5.122 19 H 0.115 0.885 20 H 0.054 0.946 21 H 0.051 0.949 22 H 0.109 0.891 23 H 0.143 0.857 24 H 0.232 0.768 25 H 0.380 0.620 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.896 -15.488 6.658 19.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.018 4.018 3 N -0.082 5.082 4 C -0.187 4.187 5 C -0.184 4.184 6 C 0.223 3.777 7 H 0.085 0.915 8 O -0.377 6.377 9 C -0.589 4.589 10 H 0.045 0.955 11 C -0.172 4.172 12 N -0.578 5.578 13 Si 0.808 3.192 14 H -0.187 1.187 15 H -0.231 1.231 16 H -0.183 1.183 17 N -0.174 5.174 18 N -0.101 5.101 19 H 0.134 0.866 20 H 0.074 0.926 21 H 0.070 0.930 22 H 0.127 0.873 23 H 0.161 0.839 24 H 0.249 0.751 25 H 0.229 0.771 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.942 -14.674 5.703 18.619 hybrid contribution 1.141 0.004 0.565 1.273 sum -8.801 -14.670 6.268 18.220 Atomic orbital electron populations 1.22060 0.92337 1.05067 1.02475 1.22607 0.97307 0.74346 1.07572 1.47861 1.29667 1.12897 1.17763 1.23737 0.99926 0.94486 1.00539 1.23116 1.02102 0.97062 0.96092 1.17696 0.87907 0.87741 0.84382 0.91513 1.86341 1.61144 1.53744 1.36462 1.21547 1.18025 1.23098 0.96191 0.95504 1.25927 0.93765 0.94802 1.02700 1.70085 1.21582 1.28859 1.37301 0.85183 0.79713 0.75583 0.78731 1.18740 1.23062 1.18349 1.74981 1.10419 1.17235 1.14779 1.78063 1.22172 0.93517 1.16354 0.86638 0.92649 0.93003 0.87252 0.83919 0.75141 0.77062 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 10.04 71.98 0.72 -1.59 15 2 C 0.10 1.57 7.18 86.38 0.62 2.19 15 3 N -0.29 -8.52 3.44 -347.73 -1.20 -9.72 15 4 C -0.04 -1.14 10.78 83.49 0.90 -0.24 15 5 C -0.04 -1.96 6.39 41.60 0.27 -1.69 15 6 C 0.28 13.70 2.86 29.10 0.08 13.78 15 7 H 0.07 3.40 7.19 -2.39 -0.02 3.38 15 8 O -0.57 -23.33 10.52 -148.98 -1.57 -24.89 15 9 C -0.55 -32.61 9.32 25.60 0.24 -32.37 15 10 H 0.03 1.82 7.98 -2.91 -0.02 1.79 15 11 C 0.03 1.65 5.47 84.66 0.46 2.11 15 12 N -0.94 -59.61 13.96 21.45 0.30 -59.31 15 13 Si 0.98 47.23 26.18 68.60 1.80 49.03 15 14 H -0.26 -11.91 7.11 99.48 0.71 -11.21 15 15 H -0.30 -14.41 7.11 99.48 0.71 -13.70 15 16 H -0.26 -12.05 6.54 99.48 0.65 -11.40 15 17 N -0.31 -14.90 12.40 -48.60 -0.60 -15.50 15 18 N -0.12 -4.90 12.91 37.02 0.48 -4.42 15 19 H 0.12 0.82 8.14 -2.39 -0.02 0.80 15 20 H 0.05 0.89 8.14 -2.39 -0.02 0.87 15 21 H 0.05 0.99 8.12 -2.39 -0.02 0.97 15 22 H 0.11 1.45 8.14 -2.39 -0.02 1.43 15 23 H 0.14 1.11 8.07 -2.39 -0.02 1.09 15 24 H 0.23 4.91 7.94 -2.91 -0.02 4.89 15 25 H 0.38 12.96 8.85 -74.06 -0.66 12.30 15 26 H 0.27 15.89 8.31 -92.71 -0.77 15.12 15 Total: -1.00 -79.28 233.08 2.98 -76.30 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 0.48 Total: 6.34 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 3.29 Total: -17.82 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -1.02 Total: -88.96 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -1.57 Total: -24.89 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.80 Total: 49.03 kcal Total: -79.28 2.98 -76.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714414686.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.109 kcal (2) G-P(sol) polarization free energy of solvation -79.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds