Wall clock time and date at job start Mon Mar 30 2020 02:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00193 * 2 1 4 4 H 1.48505 * 109.46944 * 269.99935 * 3 2 1 5 5 H 1.48493 * 109.47180 * 29.99980 * 3 2 1 6 6 H 1.48500 * 109.47037 * 150.00181 * 3 2 1 7 7 C 1.37879 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99480 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00466 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47423 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47288 * 179.97438 * 10 9 7 12 12 C 1.48340 * 110.99807 * 76.41133 * 11 10 9 13 13 C 1.56010 * 104.98738 * 122.92344 * 12 11 10 14 14 H 1.09002 * 116.12328 * 158.77668 * 13 12 11 15 15 C 1.57058 * 99.74268 * 32.89138 * 13 12 11 16 16 C 1.49790 * 111.00153 * 193.61652 * 11 10 9 17 17 H 1.09006 * 116.41089 * 74.96984 * 16 11 10 18 18 C 1.56105 * 103.75689 * 304.61251 * 16 11 10 19 19 O 1.44107 * 105.40301 * 288.52366 * 18 16 11 20 20 H 0.96999 * 119.99376 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47237 * 59.99962 * 9 7 2 22 22 H 1.08997 * 109.47304 * 300.00147 * 9 7 2 23 23 H 1.08994 * 109.46978 * 60.00321 * 10 9 7 24 24 H 1.09001 * 109.46774 * 299.99854 * 10 9 7 25 25 H 1.08998 * 110.34074 * 241.80131 * 12 11 10 26 26 H 1.08996 * 110.33593 * 4.05169 * 12 11 10 27 27 H 1.08999 * 112.45294 * 191.25533 * 15 13 12 28 28 H 1.09005 * 112.53315 * 63.61744 * 15 13 12 29 29 H 1.09004 * 110.25596 * 47.50290 * 18 16 11 30 30 H 1.08999 * 110.26092 * 169.53435 * 18 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 7 5.4906 -2.6367 -0.0011 12 6 6.0232 -2.3108 1.3445 13 6 6.9328 -3.5208 1.7222 14 1 7.6868 -3.3340 2.4868 15 6 7.4659 -3.9078 0.2965 16 6 6.0271 -3.9959 -0.3303 17 1 5.9636 -4.3024 -1.3744 18 6 5.3569 -4.9261 0.7292 19 8 5.9962 -4.6045 1.9800 20 1 -0.4849 0.8401 -0.0004 21 1 3.8753 -0.6797 0.8895 22 1 3.8746 -0.6809 -0.8905 23 1 3.6579 -3.1506 -0.8896 24 1 3.6585 -3.1502 0.8904 25 1 6.6098 -1.3929 1.3076 26 1 5.2078 -2.2118 2.0609 27 1 7.9817 -4.8680 0.2914 28 1 8.0680 -3.1181 -0.1529 29 1 4.2878 -4.7218 0.7883 30 1 5.5285 -5.9722 0.4755 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718291058.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:09 Heat of formation + Delta-G solvation = -14.227948 kcal Electronic energy + Delta-G solvation = -12890.460087 eV Core-core repulsion = 10686.660627 eV Total energy + Delta-G solvation = -2203.799460 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.91492 -35.24339 -33.05330 -31.37484 -29.82824 -28.62460 -24.89581 -23.90499 -21.46528 -20.63613 -19.00947 -17.07850 -16.68310 -16.18019 -15.25658 -14.22038 -14.03728 -13.61955 -12.83513 -12.58542 -12.36813 -12.15282 -11.90078 -11.55120 -11.49887 -11.21874 -11.11473 -10.81616 -10.11895 -9.75681 -9.73803 -9.37006 -9.18404 -8.52435 -7.89105 -6.03873 -4.02160 3.33385 3.40091 3.45750 3.76672 4.24678 4.37225 4.47083 4.62745 4.91735 4.96541 5.30764 5.38290 5.58047 5.69164 5.72485 5.80968 5.85229 6.01392 6.12557 6.15258 6.30012 6.75182 6.77554 7.07023 7.12698 7.46031 7.56053 7.83413 8.53111 8.99779 9.58656 11.09458 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.061687 B = 0.009074 C = 0.008577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.795839 B = 3084.841125 C = 3263.838727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.070 0.930 9 C -0.003 4.003 10 C 0.057 3.943 11 N -0.517 5.517 12 C 0.011 3.989 13 C 0.048 3.952 14 H 0.135 0.865 15 C -0.155 4.155 16 C 0.028 3.972 17 H 0.129 0.871 18 C 0.008 3.992 19 O -0.381 6.381 20 H 0.263 0.737 21 H 0.014 0.986 22 H 0.019 0.981 23 H 0.066 0.934 24 H 0.038 0.962 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.508 -6.764 0.973 16.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.088 0.912 9 C -0.041 4.041 10 C -0.070 4.070 11 N -0.242 5.242 12 C -0.118 4.118 13 C -0.010 4.010 14 H 0.153 0.847 15 C -0.193 4.193 16 C -0.080 4.080 17 H 0.147 0.853 18 C -0.070 4.070 19 O -0.300 6.300 20 H 0.073 0.927 21 H 0.032 0.968 22 H 0.038 0.962 23 H 0.085 0.915 24 H 0.056 0.944 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.435 -6.342 0.789 15.787 hybrid contribution -0.049 0.402 0.367 0.546 sum 14.387 -5.940 1.155 15.607 Atomic orbital electron populations 1.69919 1.06310 1.26912 1.51142 1.24997 0.94724 0.99204 0.94464 0.86734 0.80321 0.83417 0.78565 1.20246 1.21481 1.18966 1.21085 0.89414 0.94508 1.51046 0.91161 1.19501 0.96316 0.91495 0.96781 1.22414 0.83865 1.00682 1.00045 1.65168 1.10733 1.23343 1.24910 1.23927 0.98958 0.97849 0.91035 1.25062 0.91311 0.87969 0.96645 0.84722 1.24278 0.96713 1.02337 0.95996 1.25077 0.93936 0.89882 0.99125 0.85313 1.24305 0.98603 0.99191 0.84906 1.89021 1.56715 1.54027 1.30233 0.92729 0.96751 0.96232 0.91518 0.94424 0.90062 0.91068 0.90019 0.88963 0.89806 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.24 13.96 55.43 0.77 -27.46 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 22.23 27.47 -169.99 -4.67 17.56 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.52 -15.15 9.66 -34.44 -0.33 -15.49 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.00 -0.08 4.17 -27.89 -0.12 -0.19 16 10 C 0.06 1.17 3.66 -3.82 -0.01 1.16 16 11 N -0.52 -9.05 5.24 -216.52 -1.13 -10.19 16 12 C 0.01 0.17 5.72 -1.42 -0.01 0.16 16 13 C 0.05 0.64 5.95 -22.92 -0.14 0.50 16 14 H 0.14 1.41 8.14 -51.93 -0.42 0.98 16 15 C -0.16 -1.83 6.87 -22.26 -0.15 -1.98 16 16 C 0.03 0.39 5.28 -62.16 -0.33 0.07 16 17 H 0.13 1.58 8.14 -51.93 -0.42 1.16 16 18 C 0.01 0.11 6.80 38.82 0.26 0.38 16 19 O -0.38 -6.08 11.24 -35.23 -0.40 -6.47 16 20 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 21 H 0.01 0.36 6.70 -51.93 -0.35 0.01 16 22 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 23 H 0.07 1.35 8.04 -51.93 -0.42 0.94 16 24 H 0.04 0.80 6.05 -51.93 -0.31 0.49 16 25 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.07 1.29 7.29 -51.93 -0.38 0.91 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.37 5.51 -51.93 -0.29 1.09 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 238.54 15.07 3.59 3.59 Total: -1.00 -31.78 238.54 -7.01 -38.79 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -4.26 Total: -2.33 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -0.92 Total: -13.50 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.36 Total: -37.65 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.40 Total: -6.47 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -31.78 -7.01 -38.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718291058.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.567 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds