Wall clock time and date at job start Mon Mar 30 2020 02:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00193 * 2 1 4 4 H 1.48505 * 109.46944 * 269.99935 * 3 2 1 5 5 H 1.48493 * 109.47180 * 29.99980 * 3 2 1 6 6 H 1.48500 * 109.47037 * 150.00181 * 3 2 1 7 7 C 1.37879 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99480 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00466 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47423 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47288 * 179.97438 * 10 9 7 12 12 C 1.48340 * 110.99807 * 76.41133 * 11 10 9 13 13 C 1.56010 * 104.98738 * 122.92344 * 12 11 10 14 14 H 1.09002 * 116.12328 * 158.77668 * 13 12 11 15 15 C 1.57058 * 99.74268 * 32.89138 * 13 12 11 16 16 C 1.49790 * 111.00153 * 193.61652 * 11 10 9 17 17 H 1.09006 * 116.41089 * 74.96984 * 16 11 10 18 18 C 1.56105 * 103.75689 * 304.61251 * 16 11 10 19 19 O 1.44107 * 105.40301 * 288.52366 * 18 16 11 20 20 H 0.96999 * 119.99376 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47237 * 59.99962 * 9 7 2 22 22 H 1.08997 * 109.47304 * 300.00147 * 9 7 2 23 23 H 1.08994 * 109.46978 * 60.00321 * 10 9 7 24 24 H 1.09001 * 109.46774 * 299.99854 * 10 9 7 25 25 H 1.08998 * 110.34074 * 241.80131 * 12 11 10 26 26 H 1.08996 * 110.33593 * 4.05169 * 12 11 10 27 27 H 1.08999 * 112.45294 * 191.25533 * 15 13 12 28 28 H 1.09005 * 112.53315 * 63.61744 * 15 13 12 29 29 H 1.09004 * 110.25596 * 47.50290 * 18 16 11 30 30 H 1.08999 * 110.26092 * 169.53435 * 18 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 7 5.4906 -2.6367 -0.0011 12 6 6.0232 -2.3108 1.3445 13 6 6.9328 -3.5208 1.7222 14 1 7.6868 -3.3340 2.4868 15 6 7.4659 -3.9078 0.2965 16 6 6.0271 -3.9959 -0.3303 17 1 5.9636 -4.3024 -1.3744 18 6 5.3569 -4.9261 0.7292 19 8 5.9962 -4.6045 1.9800 20 1 -0.4849 0.8401 -0.0004 21 1 3.8753 -0.6797 0.8895 22 1 3.8746 -0.6809 -0.8905 23 1 3.6579 -3.1506 -0.8896 24 1 3.6585 -3.1502 0.8904 25 1 6.6098 -1.3929 1.3076 26 1 5.2078 -2.2118 2.0609 27 1 7.9817 -4.8680 0.2914 28 1 8.0680 -3.1181 -0.1529 29 1 4.2878 -4.7218 0.7883 30 1 5.5285 -5.9722 0.4755 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718291058.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:08 Heat of formation + Delta-G solvation = -38.235937 kcal Electronic energy + Delta-G solvation = -12891.501152 eV Core-core repulsion = 10686.660627 eV Total energy + Delta-G solvation = -2204.840525 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.08460 -36.74423 -35.01619 -33.06102 -31.00666 -30.20658 -26.40702 -25.46688 -22.87504 -22.07609 -20.34109 -19.07564 -17.84581 -17.58760 -16.63836 -16.16797 -15.54813 -15.12438 -14.74397 -13.97939 -13.66288 -13.55943 -13.46329 -12.92618 -12.87572 -12.53495 -12.35123 -12.32169 -11.89002 -11.69052 -11.54414 -11.42675 -10.81135 -10.53700 -9.25208 -8.33243 -6.38073 1.34216 1.35790 1.48859 2.33980 2.68792 2.98297 3.02072 3.32639 3.52648 3.81702 3.96121 4.15658 4.35048 4.40989 4.49710 4.64838 4.73149 4.87110 4.92111 4.94300 4.98192 5.06718 5.24076 5.36841 5.57633 5.68851 5.86241 6.03228 6.24147 6.68988 7.26962 8.83479 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.061687 B = 0.009074 C = 0.008577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.795839 B = 3084.841125 C = 3263.838727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.251 1.251 7 C -0.536 4.536 8 H 0.031 0.969 9 C 0.005 3.995 10 C 0.073 3.927 11 N -0.526 5.526 12 C 0.003 3.997 13 C 0.051 3.949 14 H 0.168 0.832 15 C -0.137 4.137 16 C 0.024 3.976 17 H 0.148 0.852 18 C 0.005 3.995 19 O -0.403 6.403 20 H 0.268 0.732 21 H 0.012 0.988 22 H 0.021 0.979 23 H 0.063 0.937 24 H 0.021 0.979 25 H 0.094 0.906 26 H 0.041 0.959 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.055 0.945 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.459 -6.438 0.688 18.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.175 1.175 7 C -0.574 4.574 8 H 0.049 0.951 9 C -0.033 4.033 10 C -0.055 4.055 11 N -0.250 5.250 12 C -0.126 4.126 13 C -0.006 4.006 14 H 0.185 0.815 15 C -0.174 4.174 16 C -0.083 4.083 17 H 0.166 0.834 18 C -0.072 4.072 19 O -0.323 6.323 20 H 0.076 0.924 21 H 0.030 0.970 22 H 0.040 0.960 23 H 0.082 0.918 24 H 0.040 0.960 25 H 0.113 0.887 26 H 0.059 0.941 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.073 0.927 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 17.404 -6.036 0.503 18.428 hybrid contribution -1.016 0.218 0.470 1.141 sum 16.388 -5.818 0.973 17.417 Atomic orbital electron populations 1.70065 1.08253 1.28290 1.52378 1.25999 0.95648 1.03558 0.93886 0.85591 0.79257 0.78038 0.79342 1.18911 1.20718 1.17465 1.21409 0.91895 0.93235 1.50904 0.95080 1.19359 0.93308 0.94206 0.96436 1.22036 0.86529 0.97733 0.99210 1.65084 1.08034 1.26026 1.25891 1.24013 0.98771 1.00088 0.89691 1.25368 0.90807 0.85617 0.98813 0.81496 1.24263 0.95167 1.04084 0.93927 1.25345 0.95382 0.87529 1.00092 0.83433 1.24304 0.97104 1.00837 0.84982 1.89004 1.57503 1.54725 1.31092 0.92351 0.96956 0.96048 0.91810 0.96047 0.88740 0.94080 0.87525 0.87604 0.92684 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 2 C 0.01 0.37 5.47 84.65 0.46 0.83 16 3 Si 0.95 45.72 27.47 68.60 1.88 47.61 16 4 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 6 H -0.25 -11.35 6.54 99.48 0.65 -10.70 16 7 C -0.54 -32.11 9.66 25.60 0.25 -31.86 16 8 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 9 C 0.00 0.24 4.17 29.85 0.12 0.36 16 10 C 0.07 3.05 3.66 86.30 0.32 3.36 16 11 N -0.53 -17.68 5.24 -838.94 -4.40 -22.08 16 12 C 0.00 0.08 5.72 87.07 0.50 0.58 16 13 C 0.05 1.20 5.95 33.06 0.20 1.40 16 14 H 0.17 2.81 8.14 -2.39 -0.02 2.79 16 15 C -0.14 -2.65 6.87 33.49 0.23 -2.42 16 16 C 0.02 0.61 5.28 46.90 0.25 0.86 16 17 H 0.15 3.17 8.14 -2.38 -0.02 3.15 16 18 C 0.01 0.15 6.80 73.06 0.50 0.65 16 19 O -0.40 -12.20 11.24 -148.98 -1.67 -13.88 16 20 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 21 H 0.01 0.61 6.70 -2.38 -0.02 0.59 16 22 H 0.02 1.04 7.57 -2.39 -0.02 1.03 16 23 H 0.06 2.65 8.04 -2.39 -0.02 2.63 16 24 H 0.02 0.96 6.05 -2.39 -0.01 0.94 16 25 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.04 1.50 7.29 -2.39 -0.02 1.48 16 27 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.06 1.85 5.51 -2.39 -0.01 1.83 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -69.85 238.54 -0.01 -69.86 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: 1.06 Total: 5.20 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: 2.82 Total: -26.24 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -4.10 Total: -82.56 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -1.67 Total: -13.88 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.88 Total: 47.61 kcal Total: -69.85 -0.01 -69.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718291058.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.629 kcal (2) G-P(sol) polarization free energy of solvation -69.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds