Wall clock time and date at job start Mon Mar 30 2020 02:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.47248 * 180.02562 * 10 9 7 12 12 C 1.47845 * 110.99836 * 290.83962 * 11 10 9 13 13 C 1.54897 * 104.79630 * 213.63535 * 12 11 10 14 14 C 1.55144 * 101.65723 * 37.07305 * 13 12 11 15 15 H 1.09000 * 110.70505 * 82.72542 * 14 13 12 16 16 C 1.50696 * 110.70950 * 205.96558 * 14 13 12 17 17 O 1.20755 * 119.99830 * 233.59466 * 16 14 13 18 18 C 1.47440 * 111.00132 * 170.00141 * 11 10 9 19 19 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 21 21 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 22 22 H 1.09004 * 109.46930 * 299.99899 * 10 9 7 23 23 H 1.09000 * 109.47312 * 59.99955 * 10 9 7 24 24 H 1.09003 * 110.37602 * 332.46605 * 12 11 10 25 25 H 1.09006 * 110.36956 * 94.80350 * 12 11 10 26 26 H 1.09003 * 110.99203 * 278.97872 * 13 12 11 27 27 H 1.09004 * 110.99362 * 155.16026 * 13 12 11 28 28 H 1.08003 * 119.99908 * 53.59268 * 16 14 13 29 29 H 1.09005 * 109.88663 * 242.66396 * 18 11 10 30 30 H 1.09005 * 109.88828 * 3.68275 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2450 -3.6621 0.0134 11 7 1.5104 -4.9343 0.0128 12 6 0.8139 -5.1446 1.2998 13 6 0.8551 -6.6763 1.5263 14 6 2.2585 -7.0375 0.9724 15 1 3.0276 -6.8567 1.7234 16 6 2.2945 -8.4697 0.5048 17 8 3.1439 -9.2198 0.9219 18 6 2.4212 -6.0703 -0.2191 19 1 -0.4851 -0.8400 -0.0004 20 1 0.6205 -2.5547 0.8933 21 1 0.6280 -2.5591 -0.8867 22 1 2.8757 -3.6068 -0.8739 23 1 2.8676 -3.6021 0.9061 24 1 1.3381 -4.6278 2.1039 25 1 -0.2175 -4.7982 1.2341 26 1 0.0706 -7.1763 0.9583 27 1 0.7805 -6.9164 2.5870 28 1 1.5606 -8.8251 -0.2033 29 1 2.1540 -6.5765 -1.1468 30 1 3.4504 -5.7153 -0.2738 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719105025.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:30 Heat of formation + Delta-G solvation = -46.147828 kcal Electronic energy + Delta-G solvation = -12278.104698 eV Core-core repulsion = 10072.921088 eV Total energy + Delta-G solvation = -2205.183610 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.74094 -38.14766 -34.03944 -32.09500 -29.18081 -28.57472 -24.38204 -23.03053 -21.85835 -20.58395 -20.08308 -16.79779 -16.46101 -16.03037 -15.16406 -14.33123 -14.03617 -13.79633 -13.70767 -13.07021 -12.89495 -12.33829 -11.82214 -11.54106 -11.29128 -11.12158 -10.88297 -10.75717 -10.15011 -10.05851 -9.84744 -9.66930 -8.57638 -8.31820 -7.92954 -6.36240 -4.05205 1.77085 3.43623 3.47147 3.62834 4.05818 4.33966 4.55231 4.58424 4.74559 4.80095 5.35925 5.40462 5.42063 5.53760 5.66244 5.78754 5.92031 6.00096 6.13036 6.22979 6.29727 6.77631 7.17892 7.23773 7.27364 7.55176 7.66298 8.23093 8.46694 8.88834 9.67305 11.05021 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.087580 B = 0.006424 C = 0.006183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.630701 B = 4357.471238 C = 4527.507702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 1.072 2.928 4 H -0.287 1.287 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.605 4.605 8 H 0.047 0.953 9 C 0.016 3.984 10 C 0.064 3.936 11 N -0.530 5.530 12 C 0.047 3.953 13 C -0.115 4.115 14 C -0.184 4.184 15 H 0.095 0.905 16 C 0.360 3.640 17 O -0.468 6.468 18 C 0.056 3.944 19 H 0.270 0.730 20 H 0.007 0.993 21 H 0.016 0.984 22 H 0.063 0.937 23 H 0.024 0.976 24 H 0.049 0.951 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.984 -12.588 1.328 12.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.188 4.188 3 Si 0.900 3.100 4 H -0.214 1.214 5 H -0.210 1.210 6 H -0.216 1.216 7 C -0.644 4.644 8 H 0.066 0.934 9 C -0.021 4.021 10 C -0.063 4.063 11 N -0.254 5.254 12 C -0.080 4.080 13 C -0.153 4.153 14 C -0.204 4.204 15 H 0.113 0.887 16 C 0.216 3.784 17 O -0.339 6.339 18 C -0.072 4.072 19 H 0.080 0.920 20 H 0.025 0.975 21 H 0.034 0.966 22 H 0.081 0.919 23 H 0.042 0.958 24 H 0.067 0.933 25 H 0.102 0.898 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.115 0.885 29 H 0.095 0.905 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.907 -11.307 1.152 11.525 hybrid contribution 0.794 -1.555 0.613 1.850 sum 2.702 -12.862 1.765 13.260 Atomic orbital electron populations 1.70739 1.06877 1.30726 1.46549 1.25828 0.96545 1.02648 0.93756 0.83509 0.74620 0.75106 0.76765 1.21416 1.20978 1.21568 1.22040 0.94248 0.92079 1.56006 0.93445 1.19184 0.94577 0.91824 0.96547 1.22430 0.96440 0.88200 0.99244 1.63735 1.27520 1.02295 1.31840 1.23026 1.00560 0.93677 0.90767 1.22708 0.94520 0.97078 1.01034 1.23430 1.00552 0.95862 1.00567 0.88685 1.26006 0.83912 0.88432 0.80024 1.90387 1.34970 1.58100 1.50407 1.22720 0.96768 0.91296 0.96425 0.91970 0.97477 0.96589 0.91885 0.95766 0.93283 0.89798 0.90066 0.90591 0.88519 0.90511 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.09 13.65 55.43 0.76 -27.34 16 2 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 3 Si 1.07 25.40 29.90 -169.99 -5.08 20.32 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.60 -17.33 9.11 -34.44 -0.31 -17.65 16 8 H 0.05 1.34 7.74 -52.49 -0.41 0.93 16 9 C 0.02 0.41 4.33 -27.88 -0.12 0.29 16 10 C 0.06 1.34 4.50 -3.82 -0.02 1.32 16 11 N -0.53 -9.17 5.16 -231.24 -1.19 -10.37 16 12 C 0.05 0.73 5.78 -2.30 -0.01 0.72 16 13 C -0.12 -1.30 6.51 -24.60 -0.16 -1.46 16 14 C -0.18 -2.15 3.41 -89.95 -0.31 -2.46 16 15 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 16 C 0.36 3.83 10.36 36.00 0.37 4.20 16 17 O -0.47 -6.69 17.91 6.00 0.11 -6.58 16 18 C 0.06 0.77 6.45 -2.84 -0.02 0.75 16 19 H 0.27 8.28 7.22 -40.82 -0.29 7.99 16 20 H 0.01 0.19 7.35 -51.93 -0.38 -0.20 16 21 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 22 H 0.06 1.32 8.03 -51.93 -0.42 0.90 16 23 H 0.02 0.51 7.85 -51.93 -0.41 0.10 16 24 H 0.05 0.81 7.62 -51.93 -0.40 0.41 16 25 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.10 0.72 8.06 -52.48 -0.42 0.29 16 29 H 0.08 0.93 7.81 -51.93 -0.41 0.52 16 30 H 0.06 0.82 7.55 -51.93 -0.39 0.43 16 LS Contribution 253.59 15.07 3.82 3.82 Total: -1.00 -32.14 253.59 -6.69 -38.83 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: -4.42 Total: -4.77 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -0.67 Total: -13.91 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.44 Total: -37.70 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: 0.11 Total: -6.58 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.32 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.14 -6.69 -38.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719105025.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.319 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds