Wall clock time and date at job start Mon Mar 30 2020 02:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.47248 * 180.02562 * 10 9 7 12 12 C 1.47845 * 110.99836 * 290.83962 * 11 10 9 13 13 C 1.54897 * 104.79630 * 213.63535 * 12 11 10 14 14 C 1.55144 * 101.65723 * 37.07305 * 13 12 11 15 15 H 1.09000 * 110.70505 * 82.72542 * 14 13 12 16 16 C 1.50696 * 110.70950 * 205.96558 * 14 13 12 17 17 O 1.20755 * 119.99830 * 233.59466 * 16 14 13 18 18 C 1.47440 * 111.00132 * 170.00141 * 11 10 9 19 19 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 21 21 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 22 22 H 1.09004 * 109.46930 * 299.99899 * 10 9 7 23 23 H 1.09000 * 109.47312 * 59.99955 * 10 9 7 24 24 H 1.09003 * 110.37602 * 332.46605 * 12 11 10 25 25 H 1.09006 * 110.36956 * 94.80350 * 12 11 10 26 26 H 1.09003 * 110.99203 * 278.97872 * 13 12 11 27 27 H 1.09004 * 110.99362 * 155.16026 * 13 12 11 28 28 H 1.08003 * 119.99908 * 53.59268 * 16 14 13 29 29 H 1.09005 * 109.88663 * 242.66396 * 18 11 10 30 30 H 1.09005 * 109.88828 * 3.68275 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2450 -3.6621 0.0134 11 7 1.5104 -4.9343 0.0128 12 6 0.8139 -5.1446 1.2998 13 6 0.8551 -6.6763 1.5263 14 6 2.2585 -7.0375 0.9724 15 1 3.0276 -6.8567 1.7234 16 6 2.2945 -8.4697 0.5048 17 8 3.1439 -9.2198 0.9219 18 6 2.4212 -6.0703 -0.2191 19 1 -0.4851 -0.8400 -0.0004 20 1 0.6205 -2.5547 0.8933 21 1 0.6280 -2.5591 -0.8867 22 1 2.8757 -3.6068 -0.8739 23 1 2.8676 -3.6021 0.9061 24 1 1.3381 -4.6278 2.1039 25 1 -0.2175 -4.7982 1.2341 26 1 0.0706 -7.1763 0.9583 27 1 0.7805 -6.9164 2.5870 28 1 1.5606 -8.8251 -0.2033 29 1 2.1540 -6.5765 -1.1468 30 1 3.4504 -5.7153 -0.2738 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719105025.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:30 Heat of formation + Delta-G solvation = -68.719327 kcal Electronic energy + Delta-G solvation = -12279.083472 eV Core-core repulsion = 10072.921088 eV Total energy + Delta-G solvation = -2206.162384 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.79276 -39.31442 -36.00022 -33.74417 -30.34605 -30.27963 -26.24637 -24.21169 -23.51953 -21.71796 -21.37871 -18.93486 -17.49831 -17.11843 -16.47114 -15.66604 -15.63809 -15.38695 -14.91360 -14.74960 -14.24502 -13.90392 -13.38688 -13.18037 -12.73506 -12.45822 -12.32484 -11.98577 -11.94351 -11.80568 -11.62299 -10.79244 -10.61586 -10.54747 -9.32618 -8.70423 -6.40810 0.92614 1.52445 1.61802 1.79484 2.55393 2.99476 3.15478 3.29964 3.56611 3.68049 3.87477 4.26073 4.28971 4.37591 4.42053 4.59774 4.73937 4.84013 4.86931 4.90832 4.99323 5.13681 5.24241 5.40324 5.84486 6.05343 6.12867 6.18447 6.36883 6.56845 7.41665 8.71001 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.087580 B = 0.006424 C = 0.006183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.630701 B = 4357.471238 C = 4527.507702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.037 4.037 3 Si 1.121 2.879 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.623 4.623 8 H 0.049 0.951 9 C 0.022 3.978 10 C 0.080 3.920 11 N -0.541 5.541 12 C 0.040 3.960 13 C -0.100 4.100 14 C -0.179 4.179 15 H 0.082 0.918 16 C 0.377 3.623 17 O -0.505 6.505 18 C 0.054 3.946 19 H 0.256 0.744 20 H -0.010 1.010 21 H -0.009 1.009 22 H 0.062 0.938 23 H 0.019 0.981 24 H 0.031 0.969 25 H 0.072 0.928 26 H 0.106 0.894 27 H 0.092 0.908 28 H 0.146 0.854 29 H 0.101 0.899 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.510 -13.583 1.063 13.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.234 4.234 3 Si 0.942 3.058 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.662 4.662 8 H 0.067 0.933 9 C -0.016 4.016 10 C -0.048 4.048 11 N -0.265 5.265 12 C -0.088 4.088 13 C -0.138 4.138 14 C -0.199 4.199 15 H 0.100 0.900 16 C 0.235 3.765 17 O -0.378 6.378 18 C -0.074 4.074 19 H 0.065 0.935 20 H 0.008 0.992 21 H 0.010 0.990 22 H 0.081 0.919 23 H 0.037 0.963 24 H 0.049 0.951 25 H 0.091 0.909 26 H 0.125 0.875 27 H 0.111 0.889 28 H 0.162 0.838 29 H 0.119 0.881 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.430 -12.336 0.881 12.604 hybrid contribution 0.596 -1.274 0.690 1.567 sum 3.026 -13.610 1.571 14.030 Atomic orbital electron populations 1.70878 1.07939 1.29940 1.48571 1.27447 0.96594 1.06812 0.92574 0.82887 0.74090 0.70922 0.77893 1.19630 1.20706 1.19508 1.22482 0.94645 0.93532 1.55510 0.93267 1.19050 0.94868 0.93249 0.94410 1.22055 0.95067 0.88728 0.98924 1.63647 1.28003 1.01874 1.32994 1.23069 0.99331 0.96959 0.89418 1.22664 0.94959 0.93541 1.02638 1.23372 1.00418 0.96695 0.99431 0.89955 1.26381 0.83655 0.86945 0.79486 1.90401 1.36805 1.58700 1.51930 1.22795 0.95754 0.90478 0.98350 0.93464 0.99188 0.99028 0.91912 0.96306 0.95075 0.90940 0.87545 0.88904 0.83813 0.88108 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.70 13.65 21.45 0.29 -58.41 16 2 C -0.04 -2.15 5.46 84.66 0.46 -1.69 16 3 Si 1.12 50.58 29.90 68.60 2.05 52.63 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.62 -36.22 9.11 25.60 0.23 -35.98 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.02 1.15 4.33 29.85 0.13 1.28 16 10 C 0.08 3.40 4.50 86.30 0.39 3.79 16 11 N -0.54 -18.42 5.16 -885.52 -4.57 -22.99 16 12 C 0.04 1.21 5.78 86.77 0.50 1.71 16 13 C -0.10 -1.99 6.51 31.98 0.21 -1.79 16 14 C -0.18 -3.74 3.41 -10.36 -0.04 -3.78 16 15 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 16 C 0.38 6.66 10.36 71.23 0.74 7.40 16 17 O -0.51 -13.24 17.91 -1.44 -0.03 -13.26 16 18 C 0.05 1.37 6.45 86.65 0.56 1.93 16 19 H 0.26 16.29 7.22 -92.71 -0.67 15.62 16 20 H -0.01 -0.57 7.35 -2.39 -0.02 -0.59 16 21 H -0.01 -0.50 8.01 -2.39 -0.02 -0.52 16 22 H 0.06 2.62 8.03 -2.38 -0.02 2.61 16 23 H 0.02 0.80 7.85 -2.39 -0.02 0.79 16 24 H 0.03 1.04 7.62 -2.39 -0.02 1.02 16 25 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 26 H 0.11 1.64 8.04 -2.39 -0.02 1.62 16 27 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 29 H 0.10 2.10 7.81 -2.38 -0.02 2.08 16 30 H 0.05 1.41 7.55 -2.38 -0.02 1.39 16 Total: -1.00 -70.49 253.59 2.13 -68.36 By element: Atomic # 1 Polarization: -0.40 SS G_CDS: 1.20 Total: 0.80 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 3.18 Total: -27.13 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -4.28 Total: -81.40 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.03 Total: -13.26 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.05 Total: 52.63 kcal Total: -70.49 2.13 -68.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719105025.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.357 kcal (2) G-P(sol) polarization free energy of solvation -70.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds