Wall clock time and date at job start Mon Mar 30 2020 02:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99618 * 2 1 4 4 H 1.48499 * 109.47226 * 269.99402 * 3 2 1 5 5 H 1.48495 * 109.47287 * 29.99951 * 3 2 1 6 6 H 1.48510 * 109.46587 * 150.00124 * 3 2 1 7 7 C 1.38807 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99960 * 196.99771 * 7 2 1 9 9 N 1.36938 * 119.99823 * 17.00199 * 7 2 1 10 10 C 1.46598 * 119.69259 * 27.24249 * 9 7 2 11 11 C 1.53950 * 110.60055 * 132.30262 * 10 9 7 12 12 C 1.51567 * 107.33894 * 51.20089 * 11 10 9 13 13 H 1.09001 * 109.71283 * 54.23613 * 12 11 10 14 14 O 1.42641 * 117.24391 * 179.83534 * 12 11 10 15 15 C 1.44979 * 105.16982 * 161.75784 * 14 12 11 16 16 C 1.55026 * 107.25686 * 333.23318 * 15 14 12 17 17 C 1.53314 * 103.14498 * 358.36251 * 16 15 14 18 18 H 1.09001 * 111.04592 * 268.53411 * 17 16 15 19 19 C 1.47736 * 119.68729 * 207.24077 * 9 7 2 20 20 H 0.97000 * 120.00388 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.25126 * 12.01706 * 10 9 7 22 22 H 1.08998 * 109.21639 * 252.57081 * 10 9 7 23 23 H 1.08994 * 109.88252 * 291.74306 * 11 10 9 24 24 H 1.08997 * 109.87870 * 170.65786 * 11 10 9 25 25 H 1.09002 * 109.91611 * 213.77328 * 15 14 12 26 26 H 1.09002 * 109.90813 * 92.69245 * 15 14 12 27 27 H 1.09007 * 110.68515 * 116.77373 * 16 15 14 28 28 H 1.09000 * 110.68935 * 239.94451 * 16 15 14 29 29 H 1.08997 * 110.06784 * 112.68435 * 19 9 7 30 30 H 1.09000 * 110.07342 * 351.10566 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0549 -1.2224 0.2740 9 7 1.3704 -2.3622 -0.3457 10 6 0.2196 -2.3140 -1.2526 11 6 0.3601 -3.3714 -2.3627 12 6 0.6523 -4.6974 -1.6891 13 1 -0.1146 -4.9079 -0.9437 14 8 0.8195 -5.8354 -2.5326 15 6 1.5014 -6.8180 -1.7133 16 6 2.3142 -6.0420 -0.6453 17 6 2.0384 -4.5751 -0.9953 18 1 2.7908 -4.1885 -1.6828 19 6 1.8464 -3.6507 0.1982 20 1 -0.4851 0.8400 -0.0004 21 1 0.1597 -1.3241 -1.7049 22 1 -0.6917 -2.5063 -0.6864 23 1 1.1817 -3.1043 -3.0273 24 1 -0.5687 -3.4400 -2.9290 25 1 2.1737 -7.4141 -2.3306 26 1 0.7723 -7.4659 -1.2266 27 1 1.9526 -6.2732 0.3567 28 1 3.3774 -6.2654 -0.7331 29 1 1.1031 -4.0672 0.8780 30 1 2.7937 -3.5101 0.7186 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724836406.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:54 Heat of formation + Delta-G solvation = -43.834734 kcal Electronic energy + Delta-G solvation = -13142.715624 eV Core-core repulsion = 10937.632317 eV Total energy + Delta-G solvation = -2205.083307 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.08920 -37.73809 -34.38864 -33.32403 -31.71866 -29.50372 -26.86463 -24.13815 -23.46409 -22.20429 -21.08247 -18.74375 -16.97927 -16.83594 -16.53014 -16.19463 -15.70052 -15.28048 -14.58910 -14.33332 -13.74385 -13.40215 -13.10228 -12.91926 -12.67844 -12.33317 -12.26849 -12.01436 -11.90426 -11.64158 -11.51511 -11.03533 -10.54901 -10.50159 -8.77521 -7.90563 -5.36436 1.46608 1.48495 1.57154 2.49143 2.86835 3.25702 3.50934 3.76713 3.85157 4.01038 4.20323 4.32905 4.49174 4.54853 4.66046 4.72627 4.88624 4.92873 4.94964 4.99438 5.12105 5.20478 5.33440 5.44761 5.60193 5.67995 5.96736 6.34943 7.11888 7.81398 8.29724 9.16546 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.069146 B = 0.010190 C = 0.009483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.843279 B = 2747.146241 C = 2951.967465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.269 4.269 8 H 0.069 0.931 9 N -0.615 5.615 10 C 0.191 3.809 11 C -0.121 4.121 12 C 0.081 3.919 13 H 0.051 0.949 14 O -0.395 6.395 15 C 0.041 3.959 16 C -0.139 4.139 17 C -0.131 4.131 18 H 0.070 0.930 19 C 0.157 3.843 20 H 0.251 0.749 21 H 0.055 0.945 22 H -0.001 1.001 23 H 0.058 0.942 24 H 0.071 0.929 25 H 0.102 0.898 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.024 0.976 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.699 -10.688 -2.033 11.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.399 4.399 8 H 0.087 0.913 9 N -0.338 5.338 10 C 0.065 3.935 11 C -0.161 4.161 12 C 0.023 3.977 13 H 0.069 0.931 14 O -0.315 6.315 15 C -0.035 4.035 16 C -0.177 4.177 17 C -0.151 4.151 18 H 0.088 0.912 19 C 0.032 3.968 20 H 0.060 0.940 21 H 0.074 0.926 22 H 0.017 0.983 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.120 0.880 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.042 0.958 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.526 -10.587 -2.223 11.378 hybrid contribution 0.074 1.162 0.253 1.191 sum 3.599 -9.425 -1.971 10.279 Atomic orbital electron populations 1.70200 1.06673 1.26000 1.55277 1.25836 0.96105 1.01624 1.00993 0.85242 0.78141 0.79353 0.77560 1.21243 1.22052 1.19175 1.19578 0.93040 0.86056 1.41234 0.91347 1.44510 1.35218 1.02570 1.51543 1.20476 0.87941 0.96315 0.88800 1.21965 1.01529 0.93596 0.98962 1.22487 0.96921 0.86608 0.91642 0.93086 1.88763 1.79162 1.25961 1.37642 1.23741 0.95646 0.91118 0.92952 1.22728 1.02163 0.92811 0.99991 1.22913 0.97050 0.96074 0.99070 0.91155 1.20940 0.97594 0.85194 0.93086 0.93984 0.92630 0.98316 0.92356 0.91007 0.88026 0.90967 0.89597 0.88661 0.95834 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.70 11.19 21.65 0.24 -55.46 16 2 C -0.05 -2.82 4.87 84.86 0.41 -2.40 16 3 Si 0.97 45.01 29.59 68.60 2.03 47.04 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.27 -14.93 9.53 84.03 0.80 -14.12 16 8 H 0.07 3.68 7.87 -2.91 -0.02 3.66 16 9 N -0.61 -31.46 3.03 -698.31 -2.12 -33.57 16 10 C 0.19 9.53 5.03 86.68 0.44 9.96 16 11 C -0.12 -4.97 6.08 30.45 0.19 -4.78 16 12 C 0.08 3.00 2.74 30.98 0.08 3.08 16 13 H 0.05 1.94 8.00 -2.39 -0.02 1.92 16 14 O -0.40 -13.47 11.51 -148.98 -1.72 -15.19 16 15 C 0.04 1.02 7.71 72.68 0.56 1.58 16 16 C -0.14 -3.49 6.68 31.39 0.21 -3.28 16 17 C -0.13 -4.57 2.90 -10.10 -0.03 -4.60 16 18 H 0.07 2.64 8.09 -2.39 -0.02 2.62 16 19 C 0.16 6.49 6.02 85.87 0.52 7.00 16 20 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 21 H 0.06 3.10 6.19 -2.39 -0.01 3.09 16 22 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 23 H 0.06 2.41 8.09 -2.39 -0.02 2.39 16 24 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 25 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.09 1.97 8.02 -2.38 -0.02 1.95 16 28 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.02 0.98 8.10 -2.39 -0.02 0.96 16 30 H 0.06 2.47 7.93 -2.39 -0.02 2.46 16 Total: -1.00 -63.10 239.49 2.72 -60.38 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: 1.10 Total: 4.36 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 3.18 Total: -7.56 kcal Atomic # 7 Polarization: -87.16 SS G_CDS: -1.87 Total: -89.03 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -1.72 Total: -15.19 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -63.10 2.72 -60.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724836406.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.549 kcal (2) G-P(sol) polarization free energy of solvation -63.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds