Wall clock time and date at job start Mon Mar 30 2020 02:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 7 12 12 H 1.08998 * 115.55697 * 350.65972 * 11 10 9 13 13 C 1.53121 * 117.51092 * 136.39308 * 11 10 9 14 14 C 1.52456 * 59.85789 * 107.44734 * 13 11 10 15 15 C 1.53257 * 128.58185 * 117.59722 * 14 13 11 16 16 C 1.53890 * 86.88306 * 114.94787 * 15 14 13 17 17 O 1.42897 * 113.58569 * 270.39220 * 16 15 14 18 18 C 1.53255 * 128.59042 * 242.39602 * 14 13 11 19 19 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 21 21 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 22 22 H 1.00902 * 111.00582 * 303.95889 * 10 9 7 23 23 H 1.08997 * 117.51473 * 214.89999 * 13 11 10 24 24 H 1.09008 * 117.51305 * 0.02562 * 13 11 10 25 25 H 1.09007 * 113.64440 * 229.44397 * 15 14 13 26 26 H 1.08993 * 113.64858 * 0.44798 * 15 14 13 27 27 H 1.09001 * 113.58525 * 139.56989 * 16 15 14 28 28 H 0.96699 * 113.99885 * 277.65869 * 17 16 15 29 29 H 1.09007 * 113.63984 * 359.55794 * 18 14 13 30 30 H 1.08997 * 113.64984 * 130.55148 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9071 0.0001 12 1 0.4284 -4.8579 0.1600 13 6 2.0324 -5.9979 -0.9364 14 6 2.2485 -6.1109 0.5685 15 6 1.7315 -7.1864 1.5302 16 6 3.2033 -7.5783 1.7498 17 8 3.6745 -8.5678 0.8327 18 6 3.5694 -6.1395 1.3450 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5568 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 2.8407 -3.5487 -0.7818 23 1 1.3020 -6.6665 -1.3919 24 1 2.8988 -5.7572 -1.5525 25 1 1.2493 -6.7818 2.4201 26 1 1.1407 -7.9616 1.0424 27 1 3.4419 -7.8137 2.7870 28 1 3.4477 -9.4743 1.0815 29 1 4.4521 -6.0755 0.7086 30 1 3.5989 -5.4435 2.1833 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724948963.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:19 Heat of formation + Delta-G solvation = -2.116547 kcal Electronic energy + Delta-G solvation = -12217.912125 eV Core-core repulsion = 10014.637854 eV Total energy + Delta-G solvation = -2203.274271 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.51935 -36.30804 -34.09561 -32.52398 -30.61551 -26.11819 -25.51452 -22.36747 -21.83475 -20.69579 -18.38484 -17.03897 -16.28556 -15.17839 -14.85104 -14.53398 -14.19133 -13.77292 -12.86156 -12.65689 -12.33010 -12.17934 -11.63316 -11.32083 -10.90438 -10.83466 -10.72723 -10.50019 -10.02996 -9.88879 -9.59226 -9.46024 -8.98884 -8.46273 -7.11628 -6.03419 -4.05396 3.31420 3.38498 3.43915 4.08232 4.32534 4.41978 4.66835 4.79459 5.02318 5.13108 5.32605 5.36580 5.51481 5.84425 5.88157 5.96045 6.08159 6.13547 6.36333 6.37938 6.44353 6.59372 7.26775 7.43027 7.67075 7.79840 8.13317 8.39734 8.61320 9.04239 9.59606 11.07807 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.074570 B = 0.006586 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.395730 B = 4250.598035 C = 4379.626414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.655 5.655 11 C 0.053 3.947 12 H 0.100 0.900 13 C -0.176 4.176 14 C -0.150 4.150 15 C -0.130 4.130 16 C 0.077 3.923 17 O -0.549 6.549 18 C -0.079 4.079 19 H 0.261 0.739 20 H -0.012 1.012 21 H 0.029 0.971 22 H 0.331 0.669 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.373 0.627 29 H 0.069 0.931 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.830 -13.946 2.300 14.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.284 5.284 11 C -0.059 4.059 12 H 0.118 0.882 13 C -0.214 4.214 14 C -0.152 4.152 15 C -0.168 4.168 16 C 0.018 3.982 17 O -0.354 6.354 18 C -0.116 4.116 19 H 0.071 0.929 20 H 0.006 0.994 21 H 0.047 0.953 22 H 0.150 0.850 23 H 0.105 0.895 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.220 0.780 29 H 0.088 0.912 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.994 -13.229 2.677 14.076 hybrid contribution -0.272 0.377 -0.639 0.790 sum 3.722 -12.852 2.038 13.535 Atomic orbital electron populations 1.69974 1.06098 1.26704 1.50986 1.24990 0.94877 0.99393 0.95313 0.86418 0.80065 0.83284 0.77508 1.19644 1.21076 1.20974 1.21224 0.93576 0.90224 1.50267 0.91897 1.19621 0.90595 0.87111 0.95884 1.60327 1.20277 0.99910 1.47901 1.22423 0.96187 0.86663 1.00618 0.88209 1.23271 1.03040 1.03906 0.91228 1.22257 0.98434 0.99956 0.94540 1.23146 0.96763 0.97639 0.99220 1.22729 0.94212 0.89897 0.91353 1.86509 1.79737 1.17997 1.51130 1.22371 0.96473 0.92722 1.00037 0.92950 0.99367 0.95306 0.85032 0.89539 0.89011 0.89221 0.91540 0.91847 0.78033 0.91186 0.88180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -14.77 9.32 -34.44 -0.32 -15.09 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.19 5.19 5.29 -4.98 -0.03 5.16 16 10 N -0.66 -14.55 6.75 -108.21 -0.73 -15.28 16 11 C 0.05 1.00 6.32 -67.92 -0.43 0.57 16 12 H 0.10 1.94 7.90 -51.93 -0.41 1.53 16 13 C -0.18 -2.86 10.23 -26.95 -0.28 -3.13 16 14 C -0.15 -2.42 2.96 -154.80 -0.46 -2.88 16 15 C -0.13 -1.71 7.93 -26.13 -0.21 -1.91 16 16 C 0.08 0.96 5.27 -25.81 -0.14 0.82 16 17 O -0.55 -6.76 13.59 -35.23 -0.48 -7.24 16 18 C -0.08 -1.19 7.91 -26.14 -0.21 -1.40 16 19 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 20 H -0.01 -0.32 8.14 -51.93 -0.42 -0.75 16 21 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.33 7.11 8.51 -39.29 -0.33 6.78 16 23 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 24 H 0.09 1.48 8.09 -51.92 -0.42 1.06 16 25 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.37 2.73 9.12 45.56 0.42 3.15 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 260.04 15.07 3.92 3.92 Total: -1.00 -31.42 260.04 -7.41 -38.83 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -3.68 Total: 5.62 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -2.16 Total: -16.34 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.01 Total: -41.62 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.48 Total: -7.24 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.42 -7.41 -38.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724948963.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.711 kcal (2) G-P(sol) polarization free energy of solvation -31.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds