Wall clock time and date at job start Mon Mar 30 2020 02:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 7 12 12 H 1.08998 * 115.55697 * 350.65972 * 11 10 9 13 13 C 1.53121 * 117.51092 * 136.39308 * 11 10 9 14 14 C 1.52456 * 59.85789 * 107.44734 * 13 11 10 15 15 C 1.53257 * 128.58185 * 117.59722 * 14 13 11 16 16 C 1.53890 * 86.88306 * 114.94787 * 15 14 13 17 17 O 1.42897 * 113.58569 * 270.39220 * 16 15 14 18 18 C 1.53255 * 128.59042 * 242.39602 * 14 13 11 19 19 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 21 21 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 22 22 H 1.00902 * 111.00582 * 303.95889 * 10 9 7 23 23 H 1.08997 * 117.51473 * 214.89999 * 13 11 10 24 24 H 1.09008 * 117.51305 * 0.02562 * 13 11 10 25 25 H 1.09007 * 113.64440 * 229.44397 * 15 14 13 26 26 H 1.08993 * 113.64858 * 0.44798 * 15 14 13 27 27 H 1.09001 * 113.58525 * 139.56989 * 16 15 14 28 28 H 0.96699 * 113.99885 * 277.65869 * 17 16 15 29 29 H 1.09007 * 113.63984 * 359.55794 * 18 14 13 30 30 H 1.08997 * 113.64984 * 130.55148 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9071 0.0001 12 1 0.4284 -4.8579 0.1600 13 6 2.0324 -5.9979 -0.9364 14 6 2.2485 -6.1109 0.5685 15 6 1.7315 -7.1864 1.5302 16 6 3.2033 -7.5783 1.7498 17 8 3.6745 -8.5678 0.8327 18 6 3.5694 -6.1395 1.3450 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5568 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 2.8407 -3.5487 -0.7818 23 1 1.3020 -6.6665 -1.3919 24 1 2.8988 -5.7572 -1.5525 25 1 1.2493 -6.7818 2.4201 26 1 1.1407 -7.9616 1.0424 27 1 3.4419 -7.8137 2.7870 28 1 3.4477 -9.4743 1.0815 29 1 4.4521 -6.0755 0.7086 30 1 3.5989 -5.4435 2.1833 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724948963.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:19 Heat of formation + Delta-G solvation = -26.264067 kcal Electronic energy + Delta-G solvation = -12218.959240 eV Core-core repulsion = 10014.637854 eV Total energy + Delta-G solvation = -2204.321386 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.70821 -37.61939 -35.75432 -34.30649 -32.26053 -28.17344 -26.66283 -23.90757 -23.46511 -22.21386 -19.54186 -18.62690 -17.84799 -16.85615 -16.35025 -16.12746 -15.53176 -15.31166 -14.41769 -14.02114 -13.93192 -13.75449 -13.28552 -12.82378 -12.73320 -12.58438 -12.19138 -12.00824 -11.71340 -11.49765 -11.02757 -10.74884 -10.66160 -10.54848 -8.87103 -8.24665 -6.36426 1.40718 1.41434 1.55690 2.38834 2.84089 3.08663 3.26496 3.34311 3.70214 3.78738 3.87122 4.14194 4.28148 4.57448 4.62123 4.82038 4.86791 4.93237 4.95381 5.11949 5.17225 5.24191 5.29188 5.43608 5.60870 5.99973 6.43010 6.68815 6.85590 7.00013 7.34819 8.87395 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.074570 B = 0.006586 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.395730 B = 4250.598035 C = 4379.626414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.211 3.789 10 N -0.653 5.653 11 C 0.016 3.984 12 H 0.087 0.913 13 C -0.160 4.160 14 C -0.147 4.147 15 C -0.124 4.124 16 C 0.095 3.905 17 O -0.566 6.566 18 C -0.091 4.091 19 H 0.266 0.734 20 H -0.039 1.039 21 H 0.000 1.000 22 H 0.333 0.667 23 H 0.105 0.895 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.397 0.603 29 H 0.059 0.941 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.912 -14.835 2.720 15.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.084 3.916 10 N -0.282 5.282 11 C -0.095 4.095 12 H 0.105 0.895 13 C -0.199 4.199 14 C -0.149 4.149 15 C -0.162 4.162 16 C 0.036 3.964 17 O -0.375 6.375 18 C -0.128 4.128 19 H 0.075 0.925 20 H -0.021 1.021 21 H 0.018 0.982 22 H 0.151 0.849 23 H 0.123 0.877 24 H 0.110 0.890 25 H 0.114 0.886 26 H 0.099 0.901 27 H 0.111 0.889 28 H 0.247 0.753 29 H 0.078 0.922 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.080 -14.169 3.101 15.368 hybrid contribution -0.630 0.569 -0.788 1.158 sum 4.451 -13.600 2.313 14.496 Atomic orbital electron populations 1.70099 1.07861 1.28055 1.51447 1.25978 0.95812 1.03475 0.94421 0.85235 0.78845 0.78046 0.77850 1.18700 1.20180 1.20208 1.21561 0.93802 0.91392 1.50791 0.91790 1.19233 0.90575 0.88656 0.93154 1.60251 1.19514 1.00255 1.48138 1.22419 0.95816 0.86206 1.05069 0.89534 1.23271 1.02941 1.02020 0.91671 1.22560 0.99158 0.98208 0.94955 1.23206 0.97843 0.96624 0.98486 1.22542 0.92794 0.88367 0.92677 1.86452 1.79816 1.19602 1.51584 1.22466 0.95378 0.95324 0.99662 0.92519 1.02101 0.98176 0.84853 0.87719 0.88965 0.88579 0.90114 0.88850 0.75312 0.92197 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.98 44.86 29.54 68.60 2.03 46.89 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.54 -31.48 9.32 25.60 0.24 -31.25 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 9 C 0.21 11.79 5.29 85.56 0.45 12.25 16 10 N -0.65 -29.85 6.75 -496.28 -3.35 -33.20 16 11 C 0.02 0.62 6.32 44.78 0.28 0.90 16 12 H 0.09 3.51 7.90 -2.39 -0.02 3.49 16 13 C -0.16 -5.07 10.23 30.45 0.31 -4.76 16 14 C -0.15 -4.58 2.96 -52.37 -0.15 -4.73 16 15 C -0.12 -2.93 7.93 30.98 0.25 -2.68 16 16 C 0.10 2.06 5.27 31.19 0.16 2.23 16 17 O -0.57 -12.03 13.59 -148.98 -2.03 -14.06 16 18 C -0.09 -2.62 7.91 30.98 0.25 -2.37 16 19 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 20 H -0.04 -2.31 8.14 -2.39 -0.02 -2.33 16 21 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 22 H 0.33 14.67 8.51 -89.69 -0.76 13.90 16 23 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 24 H 0.09 2.90 8.09 -2.38 -0.02 2.88 16 25 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 26 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.40 4.27 9.12 -74.06 -0.68 3.59 16 29 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -67.84 260.04 -1.12 -68.96 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -0.30 Total: 18.33 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 2.25 Total: -29.88 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -3.07 Total: -90.25 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -2.03 Total: -14.06 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -67.84 -1.12 -68.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724948963.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.700 kcal (2) G-P(sol) polarization free energy of solvation -67.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds