Wall clock time and date at job start Mon Mar 30 2020 02:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 7 12 12 H 1.08992 * 115.55573 * 9.42236 * 11 10 9 13 13 C 1.53121 * 117.51434 * 223.68127 * 11 10 9 14 14 C 1.52461 * 117.51046 * 155.15150 * 11 10 9 15 15 C 1.53257 * 128.58634 * 349.85516 * 14 11 10 16 16 C 1.53885 * 86.87974 * 194.88449 * 15 14 11 17 17 O 1.42901 * 113.66413 * 270.37621 * 16 15 14 18 18 C 1.53259 * 128.58533 * 225.04852 * 14 11 10 19 19 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 21 21 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 22 22 H 1.00902 * 111.00582 * 303.95889 * 10 9 7 23 23 H 1.09002 * 117.51392 * 0.02562 * 13 11 10 24 24 H 1.08993 * 117.51181 * 145.10119 * 13 11 10 25 25 H 1.08998 * 113.64644 * 309.37944 * 15 14 11 26 26 H 1.09000 * 113.64624 * 80.38895 * 15 14 11 27 27 H 1.09010 * 113.58667 * 139.57078 * 16 15 14 28 28 H 0.96698 * 114.00066 * 277.70730 * 17 16 15 29 29 H 1.08994 * 113.64562 * 279.61626 * 18 14 11 30 30 H 1.08998 * 113.64146 * 50.52713 * 18 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 5.4697 -2.6183 0.0009 12 1 5.9656 -1.6612 0.1620 13 6 6.1505 -3.6189 -0.9371 14 6 6.1409 -3.8637 0.5691 15 6 5.5054 -5.0221 1.3456 16 6 6.9347 -5.4245 1.7498 17 8 7.5571 -6.3274 0.8336 18 6 7.3312 -3.9539 1.5303 19 1 -0.4850 0.8401 -0.0004 20 1 3.8745 -0.6801 0.8912 21 1 3.8752 -0.6804 -0.8888 22 1 3.6253 -3.0956 0.7820 23 1 5.5087 -4.2476 -1.5543 24 1 7.0946 -3.3200 -1.3925 25 1 4.8883 -4.6998 2.1843 26 1 5.0085 -5.7545 0.7093 27 1 7.0197 -5.7490 2.7870 28 1 7.3121 -7.2534 0.9663 29 1 8.2977 -3.8298 1.0421 30 1 7.2228 -3.3329 2.4196 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724948964.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:21 Heat of formation + Delta-G solvation = -23.426844 kcal Electronic energy + Delta-G solvation = -12269.387687 eV Core-core repulsion = 10065.189332 eV Total energy + Delta-G solvation = -2204.198354 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.76497 -37.60083 -35.74731 -34.32678 -32.52422 -28.67095 -26.72045 -23.62875 -23.32053 -22.03209 -19.66930 -18.96067 -17.91072 -16.95854 -16.49622 -16.09008 -15.60912 -15.23080 -14.67828 -14.16825 -13.95730 -13.86262 -13.28667 -12.98503 -12.70290 -12.47634 -12.26900 -11.89206 -11.74312 -11.50542 -11.05247 -10.84599 -10.70530 -10.53100 -9.00306 -8.33028 -6.38303 1.33878 1.35309 1.46484 2.32043 2.83691 3.00960 3.17049 3.26811 3.69914 3.73747 3.80499 4.13228 4.29735 4.54119 4.57474 4.77016 4.78194 4.89181 4.90087 5.01718 5.06165 5.19632 5.22689 5.36338 5.48619 5.96359 6.52243 6.62356 6.72332 6.95445 7.26951 8.83712 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.069983 B = 0.007110 C = 0.006870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.998623 B = 3937.002669 C = 4074.992225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.009 3.991 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.251 1.251 7 C -0.532 4.532 8 H 0.036 0.964 9 C 0.178 3.822 10 N -0.658 5.658 11 C 0.012 3.988 12 H 0.091 0.909 13 C -0.135 4.135 14 C -0.160 4.160 15 C -0.133 4.133 16 C 0.096 3.904 17 O -0.567 6.567 18 C -0.094 4.094 19 H 0.269 0.731 20 H -0.010 1.010 21 H 0.022 0.978 22 H 0.337 0.663 23 H 0.085 0.915 24 H 0.104 0.896 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.397 0.603 29 H 0.074 0.926 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.186 -8.485 4.784 18.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.188 4.188 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.175 1.175 7 C -0.571 4.571 8 H 0.055 0.945 9 C 0.050 3.950 10 N -0.288 5.288 11 C -0.099 4.099 12 H 0.109 0.891 13 C -0.173 4.173 14 C -0.161 4.161 15 C -0.171 4.171 16 C 0.037 3.963 17 O -0.375 6.375 18 C -0.131 4.131 19 H 0.078 0.922 20 H 0.008 0.992 21 H 0.041 0.959 22 H 0.156 0.844 23 H 0.103 0.897 24 H 0.122 0.878 25 H 0.112 0.888 26 H 0.085 0.915 27 H 0.113 0.887 28 H 0.247 0.753 29 H 0.093 0.907 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 16.224 -7.894 3.884 18.456 hybrid contribution -0.512 0.533 0.753 1.055 sum 15.712 -7.361 4.637 17.960 Atomic orbital electron populations 1.70049 1.08168 1.28354 1.52050 1.25885 0.95675 1.03347 0.93936 0.85628 0.79276 0.78209 0.79280 1.19110 1.20310 1.17458 1.21320 0.91291 0.93530 1.50913 0.94535 1.19776 0.93667 0.86863 0.94724 1.60072 1.04945 1.14849 1.48887 1.22443 0.87917 0.93847 1.05657 0.89113 1.22975 1.01312 1.01826 0.91225 1.22691 1.00081 0.97505 0.95856 1.23174 0.97955 0.96299 0.99627 1.22509 0.91021 0.90077 0.92668 1.86431 1.70689 1.21688 1.58689 1.22684 0.96543 0.95191 0.98714 0.92217 0.99245 0.95947 0.84436 0.89664 0.87766 0.88751 0.91500 0.88662 0.75337 0.90715 0.87245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 2 C 0.01 0.55 5.47 84.65 0.46 1.02 16 3 Si 0.95 44.66 27.47 68.60 1.88 46.54 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 7 C -0.53 -31.74 9.87 25.60 0.25 -31.49 16 8 H 0.04 2.41 8.06 -2.91 -0.02 2.39 16 9 C 0.18 8.86 4.36 85.56 0.37 9.24 16 10 N -0.66 -28.48 6.73 -496.29 -3.34 -31.82 16 11 C 0.01 0.42 6.25 44.78 0.28 0.70 16 12 H 0.09 3.14 7.90 -2.39 -0.02 3.12 16 13 C -0.14 -4.19 10.47 30.50 0.32 -3.87 16 14 C -0.16 -4.49 2.93 -52.32 -0.15 -4.65 16 15 C -0.13 -3.21 7.43 30.98 0.23 -2.98 16 16 C 0.10 1.86 5.26 31.19 0.16 2.03 16 17 O -0.57 -11.36 13.60 -148.98 -2.03 -13.38 16 18 C -0.09 -2.06 7.93 30.98 0.25 -1.82 16 19 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 20 H -0.01 -0.49 7.20 -2.39 -0.02 -0.51 16 21 H 0.02 1.12 7.57 -2.39 -0.02 1.10 16 22 H 0.34 14.22 8.23 -89.69 -0.74 13.49 16 23 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 24 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 25 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.40 4.29 9.12 -74.06 -0.68 3.61 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -69.52 255.86 -1.34 -70.86 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -0.33 Total: 19.14 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: 2.17 Total: -31.82 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -3.04 Total: -91.34 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -2.03 Total: -13.38 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.88 Total: 46.54 kcal Total: -69.52 -1.34 -70.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724948964.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.436 kcal (2) G-P(sol) polarization free energy of solvation -69.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds