Wall clock time and date at job start Mon Mar 30 2020 02:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99778 * 2 1 4 4 H 1.48503 * 109.47385 * 269.99430 * 3 2 1 5 5 H 1.48500 * 109.47674 * 29.99967 * 3 2 1 6 6 H 1.48505 * 109.47078 * 149.99775 * 3 2 1 7 7 C 1.38807 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99656 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00513 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00286 * 180.02562 * 9 7 2 11 11 C 1.54033 * 111.85116 * 299.62827 * 10 9 7 12 12 C 1.54833 * 104.46848 * 215.06880 * 11 10 9 13 13 C 1.54874 * 102.73836 * 37.57682 * 12 11 10 14 14 C 1.54342 * 104.13017 * 321.28607 * 13 12 11 15 15 H 1.09002 * 111.39666 * 146.69643 * 14 13 12 16 16 O 1.43816 * 108.58543 * 269.71661 * 14 13 12 17 17 C 1.45294 * 106.66401 * 139.79277 * 16 14 13 18 18 C 1.54612 * 112.67310 * 62.94373 * 10 9 7 19 19 H 0.97003 * 120.00127 * 0.02562 * 1 2 3 20 20 H 0.97003 * 119.99760 * 359.97438 * 9 7 2 21 21 H 1.08993 * 110.43310 * 96.32237 * 11 10 9 22 22 H 1.08996 * 110.54021 * 333.86629 * 11 10 9 23 23 H 1.09007 * 110.75554 * 279.26802 * 12 11 10 24 24 H 1.08999 * 110.76035 * 155.88924 * 12 11 10 25 25 H 1.09002 * 110.49995 * 202.62319 * 13 12 11 26 26 H 1.08994 * 110.60860 * 80.00321 * 13 12 11 27 27 H 1.09000 * 110.68669 * 201.97626 * 17 16 14 28 28 H 1.09004 * 110.29741 * 79.31571 * 17 16 14 29 29 H 1.08998 * 110.90945 * 218.31247 * 18 10 9 30 30 H 1.09000 * 110.90959 * 341.88622 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 3.7863 -3.3210 1.2435 12 6 5.1178 -4.0335 1.5848 13 6 6.1762 -2.9461 1.2751 14 6 5.6446 -2.2548 0.0017 15 1 5.8975 -1.1945 -0.0103 16 8 6.1805 -2.9347 -1.1467 17 6 5.1075 -3.0125 -2.1232 18 6 3.8487 -3.3112 -1.2697 19 1 -0.4850 0.8401 -0.0004 20 1 3.8646 -0.3620 0.0007 21 1 3.0119 -4.0522 1.0118 22 1 3.4723 -2.6846 2.0708 23 1 5.2631 -4.9064 0.9482 24 1 5.1477 -4.3128 2.6380 25 1 7.1477 -3.4022 1.0846 26 1 6.2449 -2.2327 2.0963 27 1 5.2904 -3.8193 -2.8329 28 1 5.0009 -2.0612 -2.6445 29 1 3.7853 -4.3722 -1.0283 30 1 2.9449 -2.9750 -1.7779 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872311162.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:37 Heat of formation + Delta-G solvation = -37.462011 kcal Electronic energy + Delta-G solvation = -13234.367562 eV Core-core repulsion = 11029.560598 eV Total energy + Delta-G solvation = -2204.806965 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.84072 -35.19398 -33.72478 -31.47914 -29.90800 -27.25763 -26.25245 -23.14634 -21.72212 -20.39250 -18.72301 -17.56085 -16.10311 -15.21188 -15.00835 -14.36128 -14.16795 -13.68818 -12.72688 -12.57250 -12.44173 -12.05757 -11.24888 -11.14197 -10.93550 -10.82854 -10.59387 -10.52715 -10.29232 -10.06845 -9.90715 -9.59817 -9.22835 -8.94306 -7.32880 -5.81153 -3.17623 3.34343 3.37583 3.42673 4.26170 4.55189 4.92795 4.98020 5.23336 5.39250 5.47948 5.51520 5.56056 5.73236 5.83501 5.96868 6.05908 6.12541 6.16833 6.29852 6.33545 6.43028 6.55255 6.68639 6.82352 6.96763 7.28009 7.96312 8.38268 9.15237 9.88154 10.07338 11.36827 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042724 B = 0.012426 C = 0.012114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.209090 B = 2252.710798 C = 2310.803438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.881 3.119 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.092 0.908 9 N -0.735 5.735 10 C 0.184 3.816 11 C -0.123 4.123 12 C -0.122 4.122 13 C -0.121 4.121 14 C 0.068 3.932 15 H 0.070 0.930 16 O -0.381 6.381 17 C 0.048 3.952 18 C -0.163 4.163 19 H 0.260 0.740 20 H 0.362 0.638 21 H 0.061 0.939 22 H 0.073 0.927 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.696 -5.860 0.222 12.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.712 3.288 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.370 4.370 8 H 0.110 0.890 9 N -0.378 5.378 10 C 0.092 3.908 11 C -0.163 4.163 12 C -0.160 4.160 13 C -0.159 4.159 14 C 0.009 3.991 15 H 0.088 0.912 16 O -0.301 6.301 17 C -0.028 4.028 18 C -0.203 4.203 19 H 0.070 0.930 20 H 0.196 0.804 21 H 0.080 0.920 22 H 0.092 0.908 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.652 -5.975 0.197 12.215 hybrid contribution 0.241 1.384 -0.051 1.406 sum 10.893 -4.591 0.146 11.822 Atomic orbital electron populations 1.69694 1.05070 1.25858 1.57309 1.24651 0.95196 0.97119 1.01953 0.86601 0.79266 0.85154 0.77823 1.21063 1.21677 1.20336 1.18975 0.80270 0.94721 1.43055 0.88987 1.42691 1.04066 1.01043 1.89960 1.21168 0.88892 0.87243 0.93495 1.22740 0.95987 0.98544 0.99046 1.22467 0.95443 0.97708 1.00388 1.22455 0.98958 0.98323 0.96133 1.23530 0.93525 0.95663 0.86346 0.91203 1.88990 1.35414 1.78854 1.26817 1.23636 0.86637 1.00667 0.91871 1.23575 0.98885 0.99797 0.98030 0.93011 0.80413 0.91999 0.90820 0.91780 0.92006 0.91169 0.90916 0.90002 0.92420 0.91445 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.79 13.97 55.49 0.78 -28.02 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 21.85 27.74 -169.99 -4.71 17.13 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 7 C -0.24 -6.57 9.31 -15.06 -0.14 -6.71 16 8 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 9 N -0.74 -17.13 5.09 -45.10 -0.23 -17.36 16 10 C 0.18 3.58 1.04 -129.50 -0.13 3.44 16 11 C -0.12 -2.23 5.42 -25.23 -0.14 -2.37 16 12 C -0.12 -1.80 6.88 -24.78 -0.17 -1.97 16 13 C -0.12 -1.81 6.49 -25.04 -0.16 -1.97 16 14 C 0.07 1.19 4.06 -25.10 -0.10 1.08 16 15 H 0.07 1.25 7.70 -51.93 -0.40 0.85 16 16 O -0.38 -6.69 11.16 -35.23 -0.39 -7.09 16 17 C 0.05 0.79 7.72 38.21 0.30 1.08 16 18 C -0.16 -2.95 6.22 -24.83 -0.15 -3.10 16 19 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 20 H 0.36 8.40 5.35 -40.82 -0.22 8.18 16 21 H 0.06 1.12 7.71 -51.93 -0.40 0.72 16 22 H 0.07 1.45 8.11 -51.93 -0.42 1.03 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.11 7.61 -51.93 -0.40 0.72 16 30 H 0.09 1.84 7.54 -51.93 -0.39 1.44 16 LS Contribution 240.52 15.07 3.62 3.62 Total: -1.00 -29.88 240.52 -6.09 -35.97 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -4.35 Total: 6.14 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -0.80 Total: -10.41 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.55 Total: -45.38 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.39 Total: -7.09 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.88 -6.09 -35.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872311162.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.491 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds