Wall clock time and date at job start Mon Mar 30 2020 02:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99778 * 2 1 4 4 H 1.48503 * 109.47385 * 269.99430 * 3 2 1 5 5 H 1.48500 * 109.47674 * 29.99967 * 3 2 1 6 6 H 1.48505 * 109.47078 * 149.99775 * 3 2 1 7 7 C 1.38807 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99656 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00513 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00286 * 180.02562 * 9 7 2 11 11 C 1.54033 * 111.85116 * 299.62827 * 10 9 7 12 12 C 1.54833 * 104.46848 * 215.06880 * 11 10 9 13 13 C 1.54874 * 102.73836 * 37.57682 * 12 11 10 14 14 C 1.54342 * 104.13017 * 321.28607 * 13 12 11 15 15 H 1.09002 * 111.39666 * 146.69643 * 14 13 12 16 16 O 1.43816 * 108.58543 * 269.71661 * 14 13 12 17 17 C 1.45294 * 106.66401 * 139.79277 * 16 14 13 18 18 C 1.54612 * 112.67310 * 62.94373 * 10 9 7 19 19 H 0.97003 * 120.00127 * 0.02562 * 1 2 3 20 20 H 0.97003 * 119.99760 * 359.97438 * 9 7 2 21 21 H 1.08993 * 110.43310 * 96.32237 * 11 10 9 22 22 H 1.08996 * 110.54021 * 333.86629 * 11 10 9 23 23 H 1.09007 * 110.75554 * 279.26802 * 12 11 10 24 24 H 1.08999 * 110.76035 * 155.88924 * 12 11 10 25 25 H 1.09002 * 110.49995 * 202.62319 * 13 12 11 26 26 H 1.08994 * 110.60860 * 80.00321 * 13 12 11 27 27 H 1.09000 * 110.68669 * 201.97626 * 17 16 14 28 28 H 1.09004 * 110.29741 * 79.31571 * 17 16 14 29 29 H 1.08998 * 110.90945 * 218.31247 * 18 10 9 30 30 H 1.09000 * 110.90959 * 341.88622 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 3.7863 -3.3210 1.2435 12 6 5.1178 -4.0335 1.5848 13 6 6.1762 -2.9461 1.2751 14 6 5.6446 -2.2548 0.0017 15 1 5.8975 -1.1945 -0.0103 16 8 6.1805 -2.9347 -1.1467 17 6 5.1075 -3.0125 -2.1232 18 6 3.8487 -3.3112 -1.2697 19 1 -0.4850 0.8401 -0.0004 20 1 3.8646 -0.3620 0.0007 21 1 3.0119 -4.0522 1.0118 22 1 3.4723 -2.6846 2.0708 23 1 5.2631 -4.9064 0.9482 24 1 5.1477 -4.3128 2.6380 25 1 7.1477 -3.4022 1.0846 26 1 6.2449 -2.2327 2.0963 27 1 5.2904 -3.8193 -2.8329 28 1 5.0009 -2.0612 -2.6445 29 1 3.7853 -4.3722 -1.0283 30 1 2.9449 -2.9750 -1.7779 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872311162.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:37 Heat of formation + Delta-G solvation = -57.962498 kcal Electronic energy + Delta-G solvation = -13235.256530 eV Core-core repulsion = 11029.560598 eV Total energy + Delta-G solvation = -2205.695933 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.26226 -36.74023 -35.40951 -33.35341 -31.57601 -28.67149 -27.73781 -25.06717 -23.16363 -21.71166 -20.28475 -19.57100 -17.67348 -16.64149 -16.41062 -16.17779 -15.60127 -15.18900 -14.74034 -14.16517 -13.92539 -13.64308 -12.98483 -12.71260 -12.46666 -12.30907 -12.17384 -11.91615 -11.86762 -11.74593 -11.47858 -11.41851 -10.95577 -10.56392 -9.34137 -8.02283 -5.36395 1.36381 1.38513 1.45721 2.47093 2.90697 3.26075 3.43660 3.65047 3.79444 3.99785 4.18891 4.27174 4.32460 4.48283 4.58548 4.81809 4.83815 4.86140 4.97322 5.06548 5.11829 5.19551 5.31124 5.33066 5.52109 5.78484 5.92058 6.22972 7.06014 7.81696 8.00141 9.18957 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042724 B = 0.012426 C = 0.012114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.209090 B = 2252.710798 C = 2310.803438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.948 3.052 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.254 1.254 7 C -0.216 4.216 8 H 0.061 0.939 9 N -0.739 5.739 10 C 0.165 3.835 11 C -0.124 4.124 12 C -0.110 4.110 13 C -0.116 4.116 14 C 0.067 3.933 15 H 0.067 0.933 16 O -0.382 6.382 17 C 0.052 3.948 18 C -0.161 4.161 19 H 0.257 0.743 20 H 0.364 0.636 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.113 0.887 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.277 -6.296 0.423 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.253 4.253 3 Si 0.776 3.224 4 H -0.207 1.207 5 H -0.224 1.224 6 H -0.178 1.178 7 C -0.347 4.347 8 H 0.079 0.921 9 N -0.382 5.382 10 C 0.075 3.925 11 C -0.163 4.163 12 C -0.148 4.148 13 C -0.153 4.153 14 C 0.009 3.991 15 H 0.085 0.915 16 O -0.301 6.301 17 C -0.024 4.024 18 C -0.201 4.201 19 H 0.066 0.934 20 H 0.198 0.802 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.092 0.908 24 H 0.102 0.898 25 H 0.107 0.893 26 H 0.101 0.899 27 H 0.131 0.869 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.292 -6.447 0.399 14.779 hybrid contribution -0.576 1.402 -0.136 1.522 sum 12.716 -5.045 0.263 13.683 Atomic orbital electron populations 1.69868 1.06999 1.26512 1.59963 1.25409 0.96000 1.00908 1.03023 0.85510 0.78693 0.80237 0.77957 1.20698 1.22373 1.17836 1.18863 0.82056 0.93346 1.40431 0.92140 1.42688 1.02650 1.02845 1.89971 1.21551 0.90322 0.86005 0.94623 1.22673 0.97966 0.98132 0.97570 1.22427 0.92784 0.97567 1.02029 1.22477 0.99579 0.98351 0.94909 1.23543 0.91733 0.96097 0.87745 0.91506 1.88994 1.35506 1.78739 1.26893 1.23693 0.85374 1.01582 0.91782 1.23507 0.98682 1.00414 0.97468 0.93430 0.80213 0.92850 0.92919 0.90771 0.89789 0.89325 0.89896 0.86895 0.93043 0.89795 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.55 13.97 21.65 0.30 -62.24 16 2 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 3 Si 0.95 45.32 27.74 68.60 1.90 47.22 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.25 -10.98 6.52 99.48 0.65 -10.34 16 7 C -0.22 -12.01 9.31 84.03 0.78 -11.23 16 8 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 9 N -0.74 -34.05 5.09 -296.60 -1.51 -35.56 16 10 C 0.17 6.23 1.04 5.10 0.01 6.23 16 11 C -0.12 -4.33 5.42 31.57 0.17 -4.16 16 12 C -0.11 -2.89 6.88 31.86 0.22 -2.67 16 13 C -0.12 -3.02 6.49 31.69 0.21 -2.82 16 14 C 0.07 2.17 4.06 31.65 0.13 2.30 16 15 H 0.07 2.21 7.70 -2.39 -0.02 2.19 16 16 O -0.38 -12.17 11.16 -148.98 -1.66 -13.84 16 17 C 0.05 1.57 7.72 72.66 0.56 2.13 16 18 C -0.16 -5.64 6.22 31.82 0.20 -5.45 16 19 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 20 H 0.36 16.34 5.35 -92.71 -0.50 15.85 16 21 H 0.05 1.91 7.71 -2.39 -0.02 1.90 16 22 H 0.05 2.04 8.11 -2.39 -0.02 2.02 16 23 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 24 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.09 2.05 8.08 -2.39 -0.02 2.03 16 26 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.08 2.63 7.61 -2.39 -0.02 2.61 16 30 H 0.06 2.57 7.54 -2.39 -0.02 2.55 16 Total: -1.00 -64.45 240.52 2.33 -62.12 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.56 Total: 21.12 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 2.74 Total: -18.82 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -1.21 Total: -97.81 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -1.66 Total: -13.84 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.90 Total: 47.22 kcal Total: -64.45 2.33 -62.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872311162.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.155 kcal (2) G-P(sol) polarization free energy of solvation -64.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds