Wall clock time and date at job start Mon Mar 30 2020 02:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00290 * 2 1 4 4 H 1.48492 * 109.47063 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46913 * 120.00430 * 3 2 1 6 6 H 1.48496 * 109.47386 * 240.00068 * 3 2 1 7 7 C 1.38814 * 119.99658 * 180.28437 * 2 1 3 8 8 H 1.07997 * 119.99842 * 208.52329 * 7 2 1 9 9 N 1.36933 * 120.00231 * 28.51865 * 7 2 1 10 10 C 1.47511 * 125.64470 * 19.14633 * 9 7 2 11 11 C 1.55343 * 104.87342 * 155.94305 * 10 9 7 12 12 H 1.09000 * 111.23001 * 278.15116 * 11 10 9 13 13 C 1.52995 * 110.95555 * 154.17426 * 11 10 9 14 14 O 1.42897 * 109.47550 * 73.12039 * 13 11 10 15 15 C 1.54166 * 101.32901 * 36.22207 * 11 10 9 16 16 C 1.51937 * 121.73095 * 109.12465 * 15 11 10 17 17 C 1.51919 * 121.75139 * 181.85698 * 15 11 10 18 18 C 1.47290 * 125.64796 * 199.46087 * 9 7 2 19 19 H 0.97004 * 120.00529 * 185.66479 * 1 2 3 20 20 H 1.08996 * 110.33868 * 274.91771 * 10 9 7 21 21 H 1.08998 * 110.33767 * 37.16386 * 10 9 7 22 22 H 1.09001 * 109.46897 * 193.11557 * 13 11 10 23 23 H 1.09000 * 109.47326 * 313.11589 * 13 11 10 24 24 H 0.96700 * 114.00586 * 179.97438 * 14 13 11 25 25 H 1.08996 * 117.52565 * 218.59747 * 16 15 11 26 26 H 1.08997 * 117.52558 * 3.78767 * 16 15 11 27 27 H 1.09007 * 117.52535 * 356.25493 * 17 15 11 28 28 H 1.08998 * 117.52638 * 141.42552 * 17 15 11 29 29 H 1.09005 * 109.96859 * 301.20273 * 18 9 7 30 30 H 1.08997 * 109.97275 * 62.46958 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1040 1.6962 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0101 -1.2022 -0.0060 8 1 2.9918 -1.2612 0.4404 9 7 1.4501 -2.3133 -0.5777 10 6 0.3398 -2.3133 -1.5489 11 6 0.4920 -3.6484 -2.3284 12 1 1.2355 -3.5604 -3.1207 13 6 -0.8537 -4.1099 -2.8912 14 8 -1.2182 -3.2797 -3.9957 15 6 0.9801 -4.5956 -1.2143 16 6 0.0912 -5.6916 -0.6510 17 6 1.3200 -6.0498 -1.4933 18 6 1.8521 -3.7066 -0.3197 19 1 -0.4851 -0.8359 0.0829 20 1 -0.6179 -2.2822 -1.0295 21 1 0.4310 -1.4660 -2.2285 22 1 -0.7723 -5.1442 -3.2255 23 1 -1.6160 -4.0378 -2.1154 24 1 -2.0628 -3.5156 -4.4032 25 1 0.1430 -5.8807 0.4212 26 1 -0.8893 -5.8289 -1.1067 27 1 1.1474 -6.4227 -2.5030 28 1 2.1797 -6.4746 -0.9751 29 1 2.9039 -3.8432 -0.5712 30 1 1.6844 -3.9545 0.7284 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885281694.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:26 Heat of formation + Delta-G solvation = -3.682239 kcal Electronic energy + Delta-G solvation = -12973.635266 eV Core-core repulsion = 10770.293102 eV Total energy + Delta-G solvation = -2203.342164 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.14565 -36.19760 -34.82928 -31.59345 -29.97082 -26.11016 -25.23962 -22.87168 -22.10785 -20.06000 -18.35289 -17.42939 -17.04327 -15.10134 -14.58888 -14.45799 -13.98135 -13.69027 -13.20162 -12.73155 -12.53295 -11.70276 -11.32326 -11.21560 -10.72372 -10.56629 -10.43827 -10.28258 -10.00407 -9.93672 -9.63148 -9.45053 -9.23607 -8.31497 -6.85153 -6.03935 -3.08746 3.54079 3.59574 3.76939 4.07203 4.43217 4.63902 4.90786 5.06017 5.18369 5.31023 5.42566 5.53717 5.62950 5.79920 5.86984 5.97977 6.08530 6.21429 6.28811 6.33923 6.48594 6.69425 6.76925 7.13362 7.15982 7.85944 7.89066 8.55911 9.08942 9.88368 10.46254 11.28318 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041835 B = 0.011585 C = 0.009827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.135912 B = 2416.405043 C = 2848.729685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.025 4.025 3 Si 1.065 2.935 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.339 4.339 8 H 0.063 0.937 9 N -0.603 5.603 10 C 0.162 3.838 11 C -0.073 4.073 12 H 0.083 0.917 13 C 0.089 3.911 14 O -0.568 6.568 15 C -0.124 4.124 16 C -0.170 4.170 17 C -0.170 4.170 18 C 0.171 3.829 19 H 0.268 0.732 20 H 0.026 0.974 21 H 0.051 0.949 22 H 0.038 0.962 23 H 0.047 0.953 24 H 0.372 0.628 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.030 0.970 30 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.313 -10.468 -4.550 11.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.227 4.227 3 Si 0.894 3.106 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.467 4.467 8 H 0.081 0.919 9 N -0.330 5.330 10 C 0.037 3.963 11 C -0.092 4.092 12 H 0.101 0.899 13 C 0.011 3.989 14 O -0.372 6.372 15 C -0.124 4.124 16 C -0.207 4.207 17 C -0.208 4.208 18 C 0.045 3.955 19 H 0.080 0.920 20 H 0.043 0.957 21 H 0.070 0.930 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.218 0.782 25 H 0.112 0.888 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.048 0.952 30 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.849 -8.422 -4.399 9.540 hybrid contribution -0.354 -2.094 0.063 2.124 sum -1.204 -10.516 -4.336 11.438 Atomic orbital electron populations 1.70766 1.06714 1.30203 1.47652 1.25785 0.96414 1.01162 0.99318 0.83532 0.74835 0.76024 0.76167 1.21074 1.22023 1.22066 1.19702 0.99726 0.88361 1.38864 0.91906 1.44584 1.40523 1.00266 1.47609 1.21522 0.91372 0.93223 0.90186 1.21850 0.94957 0.96726 0.95698 0.89866 1.22166 0.96667 0.92105 0.87914 1.86561 1.42729 1.59332 1.48624 1.21642 1.01955 0.89309 0.99523 1.22856 0.94912 1.03314 0.99630 1.22765 0.99377 0.97949 1.00685 1.20646 0.94977 0.85125 0.94729 0.92050 0.95650 0.93048 0.94384 0.93526 0.78236 0.88833 0.89093 0.89116 0.88864 0.95193 0.95838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.71 13.00 55.49 0.72 -27.99 16 2 C -0.02 -0.73 5.09 -17.43 -0.09 -0.82 16 3 Si 1.06 26.30 30.01 -169.99 -5.10 21.20 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.34 -10.06 10.00 -15.06 -0.15 -10.21 16 8 H 0.06 1.85 7.98 -52.49 -0.42 1.43 16 9 N -0.60 -16.34 3.27 -170.13 -0.56 -16.90 16 10 C 0.16 4.08 4.84 -2.25 -0.01 4.07 16 11 C -0.07 -1.44 3.23 -88.77 -0.29 -1.73 16 12 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 13 C 0.09 1.44 5.26 37.15 0.20 1.64 16 14 O -0.57 -9.27 13.63 -35.23 -0.48 -9.75 16 15 C -0.12 -2.26 2.23 -154.82 -0.35 -2.61 16 16 C -0.17 -2.55 9.67 -27.16 -0.26 -2.81 16 17 C -0.17 -2.43 10.17 -27.17 -0.28 -2.70 16 18 C 0.17 3.83 7.09 -3.44 -0.02 3.81 16 19 H 0.27 8.50 6.20 -40.82 -0.25 8.25 16 20 H 0.03 0.68 6.56 -51.93 -0.34 0.34 16 21 H 0.05 1.44 8.07 -51.93 -0.42 1.02 16 22 H 0.04 0.52 7.74 -51.93 -0.40 0.11 16 23 H 0.05 0.75 7.59 -51.93 -0.39 0.35 16 24 H 0.37 3.94 9.12 45.56 0.42 4.35 16 25 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 26 H 0.09 1.22 6.68 -51.93 -0.35 0.88 16 27 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.02 0.54 8.12 -51.93 -0.42 0.12 16 LS Contribution 247.57 15.07 3.73 3.73 Total: -1.00 -33.57 247.57 -6.43 -39.99 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -3.49 Total: 1.08 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -1.25 Total: -11.36 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.16 Total: -44.89 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.48 Total: -9.75 kcal Atomic # 14 Polarization: 26.30 SS G_CDS: -5.10 Total: 21.20 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -33.57 -6.43 -39.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885281694.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.310 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds