Wall clock time and date at job start Mon Mar 30 2020 02:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00290 * 2 1 4 4 H 1.48492 * 109.47063 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46913 * 120.00430 * 3 2 1 6 6 H 1.48496 * 109.47386 * 240.00068 * 3 2 1 7 7 C 1.38814 * 119.99658 * 180.28437 * 2 1 3 8 8 H 1.07997 * 119.99842 * 208.52329 * 7 2 1 9 9 N 1.36933 * 120.00231 * 28.51865 * 7 2 1 10 10 C 1.47511 * 125.64470 * 19.14633 * 9 7 2 11 11 C 1.55343 * 104.87342 * 155.94305 * 10 9 7 12 12 H 1.09000 * 111.23001 * 278.15116 * 11 10 9 13 13 C 1.52995 * 110.95555 * 154.17426 * 11 10 9 14 14 O 1.42897 * 109.47550 * 73.12039 * 13 11 10 15 15 C 1.54166 * 101.32901 * 36.22207 * 11 10 9 16 16 C 1.51937 * 121.73095 * 109.12465 * 15 11 10 17 17 C 1.51919 * 121.75139 * 181.85698 * 15 11 10 18 18 C 1.47290 * 125.64796 * 199.46087 * 9 7 2 19 19 H 0.97004 * 120.00529 * 185.66479 * 1 2 3 20 20 H 1.08996 * 110.33868 * 274.91771 * 10 9 7 21 21 H 1.08998 * 110.33767 * 37.16386 * 10 9 7 22 22 H 1.09001 * 109.46897 * 193.11557 * 13 11 10 23 23 H 1.09000 * 109.47326 * 313.11589 * 13 11 10 24 24 H 0.96700 * 114.00586 * 179.97438 * 14 13 11 25 25 H 1.08996 * 117.52565 * 218.59747 * 16 15 11 26 26 H 1.08997 * 117.52558 * 3.78767 * 16 15 11 27 27 H 1.09007 * 117.52535 * 356.25493 * 17 15 11 28 28 H 1.08998 * 117.52638 * 141.42552 * 17 15 11 29 29 H 1.09005 * 109.96859 * 301.20273 * 18 9 7 30 30 H 1.08997 * 109.97275 * 62.46958 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1040 1.6962 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0101 -1.2022 -0.0060 8 1 2.9918 -1.2612 0.4404 9 7 1.4501 -2.3133 -0.5777 10 6 0.3398 -2.3133 -1.5489 11 6 0.4920 -3.6484 -2.3284 12 1 1.2355 -3.5604 -3.1207 13 6 -0.8537 -4.1099 -2.8912 14 8 -1.2182 -3.2797 -3.9957 15 6 0.9801 -4.5956 -1.2143 16 6 0.0912 -5.6916 -0.6510 17 6 1.3200 -6.0498 -1.4933 18 6 1.8521 -3.7066 -0.3197 19 1 -0.4851 -0.8359 0.0829 20 1 -0.6179 -2.2822 -1.0295 21 1 0.4310 -1.4660 -2.2285 22 1 -0.7723 -5.1442 -3.2255 23 1 -1.6160 -4.0378 -2.1154 24 1 -2.0628 -3.5156 -4.4032 25 1 0.1430 -5.8807 0.4212 26 1 -0.8893 -5.8289 -1.1067 27 1 1.1474 -6.4227 -2.5030 28 1 2.1797 -6.4746 -0.9751 29 1 2.9039 -3.8432 -0.5712 30 1 1.6844 -3.9545 0.7284 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885281694.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:26 Heat of formation + Delta-G solvation = -28.709058 kcal Electronic energy + Delta-G solvation = -12974.720510 eV Core-core repulsion = 10770.293102 eV Total energy + Delta-G solvation = -2204.427408 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.66670 -37.48931 -36.65813 -33.58608 -31.69461 -28.03276 -27.01883 -24.59102 -23.34810 -21.89894 -19.83193 -19.52344 -18.39148 -16.70586 -16.27050 -15.84573 -15.74573 -15.48694 -14.92549 -14.32102 -14.25155 -13.50886 -12.92561 -12.69072 -12.53910 -12.36622 -12.12841 -11.91932 -11.78695 -11.58096 -11.29459 -10.90537 -10.71515 -10.47278 -9.06669 -8.39264 -5.41319 1.53094 1.62847 1.81885 2.59770 2.81873 3.12978 3.18529 3.42492 3.61782 3.82517 3.92561 4.13469 4.20962 4.39848 4.53160 4.58178 4.71734 4.74946 4.85641 4.90367 5.00016 5.10044 5.21185 5.23921 5.29031 5.62223 6.25335 6.84260 6.92949 7.64726 8.25790 8.91880 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041835 B = 0.011585 C = 0.009827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.135912 B = 2416.405043 C = 2848.729685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.078 4.078 3 Si 1.118 2.882 4 H -0.288 1.288 5 H -0.269 1.269 6 H -0.281 1.281 7 C -0.356 4.356 8 H 0.059 0.941 9 N -0.628 5.628 10 C 0.170 3.830 11 C -0.061 4.061 12 H 0.072 0.928 13 C 0.097 3.903 14 O -0.593 6.593 15 C -0.154 4.154 16 C -0.158 4.158 17 C -0.136 4.136 18 C 0.166 3.834 19 H 0.253 0.747 20 H 0.002 0.998 21 H 0.006 0.994 22 H 0.080 0.920 23 H 0.046 0.954 24 H 0.397 0.603 25 H 0.095 0.905 26 H 0.113 0.887 27 H 0.117 0.883 28 H 0.107 0.893 29 H 0.029 0.971 30 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.099 -12.398 -5.271 13.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.275 4.275 3 Si 0.941 3.059 4 H -0.214 1.214 5 H -0.195 1.195 6 H -0.208 1.208 7 C -0.484 4.484 8 H 0.077 0.923 9 N -0.355 5.355 10 C 0.044 3.956 11 C -0.080 4.080 12 H 0.090 0.910 13 C 0.019 3.981 14 O -0.402 6.402 15 C -0.155 4.155 16 C -0.195 4.195 17 C -0.173 4.173 18 C 0.041 3.959 19 H 0.063 0.937 20 H 0.020 0.980 21 H 0.024 0.976 22 H 0.098 0.902 23 H 0.065 0.935 24 H 0.247 0.753 25 H 0.114 0.886 26 H 0.131 0.869 27 H 0.135 0.865 28 H 0.125 0.875 29 H 0.047 0.953 30 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -0.637 -10.402 -5.126 11.614 hybrid contribution -0.407 -1.537 0.300 1.618 sum -1.043 -11.938 -4.827 12.919 Atomic orbital electron populations 1.70888 1.07718 1.29271 1.50254 1.27338 0.96518 1.04821 0.98779 0.82839 0.73917 0.71630 0.77475 1.21363 1.19460 1.20782 1.20022 0.99738 0.89961 1.38676 0.92313 1.44903 1.40730 1.01761 1.48076 1.21355 0.89790 0.95037 0.89404 1.21677 0.97210 0.93895 0.95265 0.90975 1.22086 0.94214 0.93765 0.88036 1.86502 1.44766 1.60182 1.48755 1.21451 1.04328 0.90624 0.99059 1.23025 0.96203 0.99927 1.00320 1.22934 0.99249 0.93023 1.02062 1.20757 0.95941 0.83806 0.95386 0.93718 0.97990 0.97586 0.90160 0.93544 0.75300 0.88612 0.86929 0.86460 0.87514 0.95261 0.96684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.35 13.00 21.65 0.28 -61.06 16 2 C -0.08 -4.80 5.09 84.86 0.43 -4.37 16 3 Si 1.12 53.92 30.01 68.60 2.06 55.98 16 4 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 5 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.36 -21.80 10.00 84.03 0.84 -20.96 16 8 H 0.06 3.55 7.98 -2.91 -0.02 3.52 16 9 N -0.63 -35.22 3.27 -692.16 -2.27 -37.48 16 10 C 0.17 8.89 4.84 86.99 0.42 9.31 16 11 C -0.06 -2.38 3.23 -9.60 -0.03 -2.41 16 12 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 13 C 0.10 2.88 5.26 71.98 0.38 3.26 16 14 O -0.59 -18.41 13.63 -148.98 -2.03 -20.44 16 15 C -0.15 -5.34 2.23 -52.38 -0.12 -5.46 16 16 C -0.16 -4.15 9.67 30.32 0.29 -3.85 16 17 C -0.14 -3.25 10.17 30.31 0.31 -2.94 16 18 C 0.17 7.50 7.09 86.34 0.61 8.11 16 19 H 0.25 16.86 6.20 -92.71 -0.57 16.28 16 20 H 0.00 0.13 6.56 -2.39 -0.02 0.12 16 21 H 0.01 0.34 8.07 -2.39 -0.02 0.32 16 22 H 0.08 1.76 7.74 -2.39 -0.02 1.75 16 23 H 0.05 1.39 7.59 -2.39 -0.02 1.37 16 24 H 0.40 7.47 9.12 -74.06 -0.68 6.79 16 25 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.11 2.49 6.68 -2.39 -0.02 2.48 16 27 H 0.12 2.27 8.14 -2.38 -0.02 2.25 16 28 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.03 1.30 8.14 -2.38 -0.02 1.29 16 30 H 0.02 0.70 8.12 -2.39 -0.02 0.68 16 Total: -1.00 -76.20 247.57 1.82 -74.37 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: 0.64 Total: 7.95 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 3.14 Total: -19.32 kcal Atomic # 7 Polarization: -96.56 SS G_CDS: -1.98 Total: -98.55 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -2.03 Total: -20.44 kcal Atomic # 14 Polarization: 53.92 SS G_CDS: 2.06 Total: 55.98 kcal Total: -76.20 1.82 -74.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885281694.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.665 kcal (2) G-P(sol) polarization free energy of solvation -76.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds