Wall clock time and date at job start Mon Mar 30 2020 02:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31583 * 1 3 3 Si 1.86798 * 120.00536 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00521 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00080 * 3 2 1 7 7 C 1.38635 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00271 * 179.97438 * 7 2 1 9 9 O 1.34934 * 119.99904 * 359.72641 * 7 2 1 10 10 C 1.42900 * 116.99617 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46633 * 179.97438 * 10 9 7 12 12 C 1.55843 * 115.57980 * 61.77288 * 11 10 9 13 13 C 1.58508 * 102.82413 * 200.59860 * 12 11 10 14 14 C 1.55846 * 102.82639 * 0.02562 * 13 12 11 15 15 C 1.55855 * 105.03146 * 288.01689 * 14 13 12 16 16 C 1.54834 * 103.51563 * 72.48359 * 15 14 13 17 17 N 1.50646 * 115.88175 * 302.89828 * 11 10 9 18 18 H 0.97000 * 119.99437 * 359.97438 * 1 2 3 19 19 H 1.08996 * 109.47339 * 299.99560 * 10 9 7 20 20 H 1.09001 * 109.47383 * 59.99999 * 10 9 7 21 21 H 1.09000 * 110.61499 * 319.61897 * 12 11 10 22 22 H 1.09006 * 110.61488 * 82.60449 * 12 11 10 23 23 H 1.08998 * 111.16194 * 241.62008 * 13 12 11 24 24 H 1.09005 * 110.86182 * 118.23855 * 13 12 11 25 25 H 1.09001 * 115.58718 * 159.39432 * 14 13 12 26 26 H 1.08996 * 110.60889 * 313.97715 * 15 14 13 27 27 H 1.08999 * 110.74931 * 191.05487 * 15 14 13 28 28 H 1.09005 * 110.61326 * 241.49202 * 16 15 14 29 29 H 1.08998 * 110.61341 * 118.50993 * 16 15 14 30 30 H 1.00898 * 111.00391 * 296.65620 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2500 1.6176 0.0000 4 1 3.7099 1.3462 -0.0006 5 1 1.8912 2.3964 -1.2124 6 1 1.8912 2.3963 1.2126 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3342 -2.3692 0.0045 10 6 2.1125 -3.5676 0.0031 11 6 1.1803 -4.7810 0.0100 12 6 0.2371 -4.9119 -1.2237 13 6 -0.9125 -5.8628 -0.6882 14 6 -0.4714 -6.1464 0.7794 15 6 0.7584 -7.0957 0.6556 16 6 1.8814 -6.1669 0.1325 17 7 0.2015 -4.8517 1.1530 18 1 -0.4849 0.8401 0.0004 19 1 2.7372 -3.5941 -0.8897 20 1 2.7454 -3.5910 0.8902 21 1 -0.1557 -3.9368 -1.5117 22 1 0.7601 -5.3780 -2.0588 23 1 -0.9564 -6.7886 -1.2618 24 1 -1.8767 -5.3549 -0.7074 25 1 -1.2606 -6.4838 1.4513 26 1 0.5566 -7.8938 -0.0588 27 1 1.0253 -7.5107 1.6275 28 1 2.2363 -6.5047 -0.8412 29 1 2.7037 -6.1193 0.8464 30 1 0.6822 -4.9356 2.0361 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885282029.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:39 Heat of formation + Delta-G solvation = -43.219570 kcal Electronic energy + Delta-G solvation = -12886.192992 eV Core-core repulsion = 10681.136361 eV Total energy + Delta-G solvation = -2205.056631 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.19517 -37.97854 -33.94632 -31.44237 -31.20586 -30.42515 -27.14308 -25.53487 -23.12009 -21.09531 -20.04527 -19.46285 -17.72250 -16.71785 -16.32085 -15.99033 -15.72925 -15.27564 -14.37269 -13.86390 -13.55937 -13.45871 -12.90781 -12.78216 -12.49341 -12.47554 -12.23196 -12.07881 -11.75848 -11.66571 -11.40143 -11.20989 -10.82875 -10.11234 -9.49659 -8.13615 -5.83536 1.38708 1.45092 1.55568 2.33490 3.10606 3.18875 3.47109 3.66288 3.85638 4.08916 4.19731 4.28548 4.39323 4.52576 4.63896 4.68636 4.72944 4.77475 4.85881 4.96612 5.06006 5.08343 5.23628 5.28872 5.32830 5.45966 5.81875 6.23157 6.49802 7.27967 8.12441 9.11027 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.069567 B = 0.008903 C = 0.008489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.394886 B = 3144.397268 C = 3297.557630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.042 4.042 3 Si 1.005 2.995 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.382 4.382 8 H 0.069 0.931 9 O -0.316 6.316 10 C 0.096 3.904 11 C 0.077 3.923 12 C -0.108 4.108 13 C -0.107 4.107 14 C 0.043 3.957 15 C -0.138 4.138 16 C -0.137 4.137 17 N -0.662 5.662 18 H 0.258 0.742 19 H 0.033 0.967 20 H 0.023 0.977 21 H 0.031 0.969 22 H 0.079 0.921 23 H 0.097 0.903 24 H 0.052 0.948 25 H 0.126 0.874 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.762 -13.922 0.033 14.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.235 4.235 3 Si 0.828 3.172 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.461 4.461 8 H 0.086 0.914 9 O -0.231 6.231 10 C 0.018 3.982 11 C -0.014 4.014 12 C -0.146 4.146 13 C -0.145 4.145 14 C -0.066 4.066 15 C -0.177 4.177 16 C -0.176 4.176 17 N -0.290 5.290 18 H 0.067 0.933 19 H 0.051 0.949 20 H 0.041 0.959 21 H 0.050 0.950 22 H 0.097 0.903 23 H 0.115 0.885 24 H 0.071 0.929 25 H 0.144 0.856 26 H 0.110 0.890 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.893 -13.281 -0.160 13.416 hybrid contribution 1.202 0.380 0.221 1.279 sum 3.095 -12.901 0.061 13.267 Atomic orbital electron populations 1.70255 1.07575 1.26856 1.53268 1.26222 0.96723 1.01954 0.98648 0.84704 0.77995 0.76599 0.77944 1.18124 1.20082 1.20174 1.21394 0.90724 0.83996 1.49946 0.91351 1.85694 1.32980 1.11164 1.93281 1.21819 0.92569 0.85960 0.97816 1.23427 0.92120 0.92728 0.93163 1.23076 0.96765 0.98729 0.96073 1.23200 0.97081 0.98948 0.95252 1.24404 0.97095 0.88367 0.96777 1.23285 0.94117 0.97932 1.02342 1.23247 0.98515 0.93306 1.02576 1.65885 1.25893 1.33354 1.03831 0.93280 0.94916 0.95866 0.95015 0.90252 0.88481 0.92929 0.85643 0.88997 0.90289 0.89812 0.91334 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -62.15 13.68 21.61 0.30 -61.85 16 2 C -0.04 -2.60 5.49 84.82 0.47 -2.13 16 3 Si 1.01 46.80 29.55 68.60 2.03 48.83 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.38 -23.63 9.89 67.91 0.67 -22.96 16 8 H 0.07 3.94 7.77 -2.91 -0.02 3.92 16 9 O -0.32 -19.34 9.48 -82.03 -0.78 -20.12 16 10 C 0.10 4.49 5.96 71.98 0.43 4.92 16 11 C 0.08 2.90 1.37 4.74 0.01 2.91 16 12 C -0.11 -4.01 6.23 33.55 0.21 -3.80 16 13 C -0.11 -3.14 6.62 33.55 0.22 -2.91 16 14 C 0.04 1.18 5.54 46.16 0.26 1.44 16 15 C -0.14 -2.97 6.33 32.21 0.20 -2.77 16 16 C -0.14 -3.65 5.98 32.19 0.19 -3.46 16 17 N -0.66 -25.16 7.61 -413.25 -3.14 -28.30 16 18 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 19 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 20 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 21 H 0.03 1.49 7.92 -2.39 -0.02 1.47 16 22 H 0.08 2.48 7.79 -2.38 -0.02 2.46 16 23 H 0.10 2.13 7.81 -2.39 -0.02 2.11 16 24 H 0.05 1.68 8.14 -2.38 -0.02 1.67 16 25 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 26 H 0.09 1.59 7.80 -2.39 -0.02 1.57 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.08 1.98 7.79 -2.38 -0.02 1.96 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.33 11.56 8.66 -89.70 -0.78 10.79 16 Total: -1.00 -75.69 247.75 1.40 -74.29 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.34 Total: 15.92 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 2.66 Total: -28.77 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -2.85 Total: -90.16 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.78 Total: -20.12 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -75.69 1.40 -74.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282029.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.073 kcal (2) G-P(sol) polarization free energy of solvation -75.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds