Wall clock time and date at job start Mon Mar 30 2020 02:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99844 * 2 1 4 4 H 1.48501 * 109.47034 * 240.00002 * 3 2 1 5 5 H 1.48502 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47297 * 120.00071 * 3 2 1 7 7 C 1.38811 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99656 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00445 * 359.72781 * 7 2 1 10 10 C 1.46503 * 120.00438 * 180.27701 * 9 7 2 11 11 C 1.52999 * 115.54916 * 180.89114 * 10 9 7 12 12 H 1.08998 * 110.27487 * 294.66502 * 11 10 9 13 13 C 1.54944 * 110.30864 * 56.86474 * 11 10 9 14 14 C 1.55305 * 100.94376 * 155.35692 * 13 11 10 15 15 C 1.54384 * 102.25319 * 325.86674 * 14 13 11 16 16 O 1.43247 * 107.58829 * 21.35192 * 15 14 13 17 17 C 1.52996 * 117.49581 * 35.21786 * 10 9 7 18 18 C 1.52998 * 117.49302 * 326.55864 * 10 9 7 19 19 H 0.97003 * 120.00740 * 0.02562 * 1 2 3 20 20 H 0.97005 * 119.99576 * 0.26989 * 9 7 2 21 21 H 1.09000 * 111.12834 * 273.27036 * 13 11 10 22 22 H 1.09003 * 111.12864 * 37.44305 * 13 11 10 23 23 H 1.08994 * 110.85625 * 207.67478 * 14 13 11 24 24 H 1.09005 * 110.85126 * 84.04878 * 14 13 11 25 25 H 1.09000 * 109.82821 * 261.84667 * 15 14 13 26 26 H 1.08996 * 109.90882 * 140.90728 * 15 14 13 27 27 H 1.08995 * 117.50616 * 0.02562 * 17 10 9 28 28 H 1.09003 * 117.49620 * 145.02924 * 17 10 9 29 29 H 1.09006 * 117.49697 * 214.97562 * 18 10 9 30 30 H 1.08995 * 117.50205 * 0.02562 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2850 2.7464 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0067 10 6 2.0582 -3.6567 0.0134 11 6 1.1928 -4.9184 -0.0015 12 1 0.6148 -4.9909 0.9197 13 6 0.2502 -4.9095 -1.2312 14 6 -0.0093 -6.4296 -1.4149 15 6 1.3398 -7.0463 -0.9870 16 8 2.0148 -6.0847 -0.1675 17 6 3.3715 -3.7100 0.7964 18 6 3.3922 -3.7061 -0.7342 19 1 -0.4851 0.8400 -0.0004 20 1 0.3556 -2.3880 0.0067 21 1 -0.6753 -4.3767 -1.0129 22 1 0.7476 -4.4876 -2.1046 23 1 -0.2293 -6.6627 -2.4566 24 1 -0.8144 -6.7675 -0.7623 25 1 1.9413 -7.2678 -1.8687 26 1 1.1666 -7.9600 -0.4185 27 1 3.6904 -2.8013 1.3070 28 1 3.6193 -4.6441 1.3006 29 1 3.6536 -4.6376 -1.2363 30 1 3.7250 -2.7946 -1.2306 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885282059.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:19 Heat of formation + Delta-G solvation = -30.357084 kcal Electronic energy + Delta-G solvation = -12871.024601 eV Core-core repulsion = 10666.525729 eV Total energy + Delta-G solvation = -2204.498872 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.73897 -38.12670 -34.80171 -33.06483 -31.48251 -30.07664 -26.24456 -23.87927 -23.14721 -22.29989 -20.29608 -19.29460 -17.90966 -17.07839 -16.55157 -15.84505 -15.66708 -15.02207 -14.55516 -14.16837 -13.93854 -13.16357 -12.96590 -12.61634 -12.56326 -12.30497 -12.22420 -12.13254 -12.01298 -11.79262 -11.62334 -10.96914 -10.66146 -10.32929 -8.85387 -8.00249 -5.27379 1.45204 1.47546 1.53909 2.46633 2.83152 3.05925 3.51762 3.60312 3.73971 3.90627 4.06625 4.22803 4.26927 4.37413 4.61705 4.66059 4.87934 4.91727 4.94295 5.03082 5.06397 5.09727 5.23516 5.32491 5.50540 5.51788 6.10779 6.25402 7.28303 7.99696 8.25948 9.22595 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.058341 B = 0.009790 C = 0.008800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.825257 B = 2859.361504 C = 3180.946357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.068 4.068 3 Si 0.972 3.028 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.241 4.241 8 H 0.075 0.925 9 N -0.692 5.692 10 C 0.136 3.864 11 C 0.125 3.875 12 H 0.071 0.929 13 C -0.142 4.142 14 C -0.144 4.144 15 C 0.044 3.956 16 O -0.391 6.391 17 C -0.202 4.202 18 C -0.191 4.191 19 H 0.254 0.746 20 H 0.381 0.619 21 H 0.078 0.922 22 H 0.066 0.934 23 H 0.099 0.901 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 -12.662 -2.500 12.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.261 4.261 3 Si 0.801 3.199 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.373 4.373 8 H 0.093 0.907 9 N -0.329 5.329 10 C 0.043 3.957 11 C 0.067 3.933 12 H 0.089 0.911 13 C -0.180 4.180 14 C -0.182 4.182 15 C -0.032 4.032 16 O -0.311 6.311 17 C -0.242 4.242 18 C -0.232 4.232 19 H 0.063 0.937 20 H 0.214 0.786 21 H 0.097 0.903 22 H 0.085 0.915 23 H 0.118 0.882 24 H 0.107 0.893 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.320 -12.544 -2.415 12.842 hybrid contribution -0.034 1.298 0.011 1.298 sum 1.286 -11.246 -2.405 11.572 Atomic orbital electron populations 1.69790 1.06417 1.26399 1.58765 1.25534 0.96424 1.00899 1.03228 0.85235 0.77305 0.79240 0.78138 1.20476 1.21712 1.20552 1.19427 0.91558 0.84526 1.41750 0.90734 1.41808 1.05302 0.99368 1.86382 1.20277 0.86162 0.86582 1.02707 1.22101 0.89641 0.83240 0.98344 0.91102 1.23121 0.99536 0.97801 0.97556 1.23121 0.97903 0.93078 1.04049 1.23342 0.93016 0.91946 0.94889 1.88344 1.43895 1.27327 1.71490 1.23250 1.05441 1.01379 0.94163 1.23161 1.04493 1.01369 0.94145 0.93744 0.78640 0.90296 0.91538 0.88219 0.89257 0.90596 0.89661 0.91202 0.88425 0.88200 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.27 13.06 21.65 0.28 -57.99 16 2 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 3 Si 0.97 46.37 29.55 68.60 2.03 48.40 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.24 -13.53 8.85 84.03 0.74 -12.79 16 8 H 0.07 4.11 6.09 -2.91 -0.02 4.09 16 9 N -0.69 -35.64 5.52 -303.35 -1.67 -37.31 16 10 C 0.14 5.79 2.76 3.60 0.01 5.80 16 11 C 0.12 4.36 3.67 31.26 0.11 4.48 16 12 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 13 C -0.14 -4.36 6.22 32.05 0.20 -4.16 16 14 C -0.14 -3.08 7.02 31.86 0.22 -2.86 16 15 C 0.04 1.00 7.79 72.45 0.56 1.57 16 16 O -0.39 -12.42 9.43 -148.98 -1.40 -13.83 16 17 C -0.20 -8.33 9.32 30.62 0.29 -8.04 16 18 C -0.19 -7.80 9.26 30.62 0.28 -7.52 16 19 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 20 H 0.38 20.47 7.71 -92.70 -0.72 19.76 16 21 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 22 H 0.07 2.24 8.06 -2.39 -0.02 2.22 16 23 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.09 1.65 8.14 -2.38 -0.02 1.64 16 25 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.07 3.12 7.28 -2.39 -0.02 3.10 16 28 H 0.10 3.65 7.93 -2.39 -0.02 3.63 16 29 H 0.10 3.67 7.47 -2.38 -0.02 3.65 16 30 H 0.07 3.06 7.17 -2.39 -0.02 3.04 16 Total: -1.00 -62.84 248.15 2.53 -60.30 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.41 Total: 27.39 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: 2.89 Total: -26.96 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -1.39 Total: -95.30 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -1.40 Total: -13.83 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -62.84 2.53 -60.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282059.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.947 kcal (2) G-P(sol) polarization free energy of solvation -62.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds