Wall clock time and date at job start Mon Mar 30 2020 02:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86801 * 119.99623 * 2 1 4 4 H 1.48500 * 109.47099 * 269.99936 * 3 2 1 5 5 H 1.48493 * 109.47552 * 30.00034 * 3 2 1 6 6 H 1.48499 * 109.46984 * 150.00152 * 3 2 1 7 7 C 1.38636 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99851 * 359.97438 * 7 2 1 9 9 O 1.34921 * 119.99981 * 179.97438 * 7 2 1 10 10 C 1.42905 * 116.99780 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46728 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.68143 * 54.30316 * 11 10 9 13 13 C 1.55089 * 110.76553 * 291.04690 * 11 10 9 14 14 N 1.48596 * 103.33824 * 204.85407 * 13 11 10 15 15 C 1.48094 * 105.86835 * 38.84002 * 14 13 11 16 16 C 1.53684 * 106.78026 * 334.63721 * 15 14 13 17 17 C 1.52317 * 121.65332 * 145.27688 * 16 15 14 18 18 C 1.52310 * 121.81007 * 217.74601 * 16 15 14 19 19 H 0.97005 * 120.00668 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47187 * 300.00020 * 10 9 7 21 21 H 1.09001 * 109.46558 * 60.00067 * 10 9 7 22 22 H 1.08995 * 110.64570 * 323.31943 * 13 11 10 23 23 H 1.08996 * 110.64703 * 86.23237 * 13 11 10 24 24 H 1.00902 * 111.00240 * 278.29243 * 14 13 11 25 25 H 1.09005 * 109.99894 * 94.11499 * 15 14 13 26 26 H 1.09007 * 110.00420 * 215.41915 * 15 14 13 27 27 H 1.08997 * 117.51429 * 218.63796 * 17 16 15 28 28 H 1.08997 * 117.52061 * 3.76591 * 17 16 15 29 29 H 1.08997 * 117.51223 * 356.48461 * 18 16 15 30 30 H 1.08991 * 117.51496 * 141.56113 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4403 0.7000 7 6 2.0091 -1.2006 -0.0005 8 1 1.4691 -2.1359 -0.0005 9 8 3.3583 -1.2005 -0.0011 10 6 4.0071 -2.4738 -0.0010 11 6 5.5238 -2.2732 -0.0023 12 1 5.8281 -1.6324 0.8254 13 6 5.9996 -1.6854 -1.3563 14 7 7.4174 -2.1224 -1.4405 15 6 7.4494 -3.4999 -0.8977 16 6 6.2536 -3.6276 0.0591 17 6 5.4825 -4.9331 0.2050 18 6 6.3462 -4.4158 1.3591 19 1 -0.4851 0.8400 0.0004 20 1 3.7146 -3.0306 0.8892 21 1 3.7138 -3.0309 -0.8908 22 1 5.4198 -2.1007 -2.1805 23 1 5.9300 -0.5977 -1.3488 24 1 8.0169 -1.5098 -0.9081 25 1 7.3594 -4.2224 -1.7089 26 1 8.3794 -3.6646 -0.3534 27 1 4.4003 -4.8688 0.3179 28 1 5.8475 -5.7981 -0.3486 29 1 7.2792 -4.9407 1.5643 30 1 5.8327 -4.0110 2.2311 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885282140.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:33 Heat of formation + Delta-G solvation = -8.417202 kcal Electronic energy + Delta-G solvation = -12693.662659 eV Core-core repulsion = 10490.115171 eV Total energy + Delta-G solvation = -2203.547487 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.54405 -36.28558 -34.71366 -31.97732 -30.20375 -26.33827 -24.91633 -23.29627 -22.46912 -20.96976 -18.55832 -17.43965 -16.48803 -15.53820 -14.90557 -14.64033 -14.29882 -13.74190 -13.11464 -12.77033 -12.33889 -12.23649 -11.86917 -11.63831 -11.34432 -10.87101 -10.69551 -10.59327 -10.24226 -9.96742 -9.66823 -9.45826 -9.27104 -8.50678 -8.15793 -5.99091 -3.66576 3.41896 3.44882 3.60564 3.79873 4.34381 4.52985 4.57338 4.81805 4.96277 5.09587 5.30749 5.40526 5.55061 5.64711 5.68907 5.79476 5.80440 5.94022 6.02752 6.10481 6.21597 6.38007 6.44508 6.46573 6.64836 6.82656 7.43624 7.92383 8.36967 9.40899 9.96166 11.13812 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048818 B = 0.009836 C = 0.008715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.420897 B = 2845.954688 C = 3212.235408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.043 3.957 3 Si 0.907 3.093 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.266 1.266 7 C -0.356 4.356 8 H 0.077 0.923 9 O -0.333 6.333 10 C 0.098 3.902 11 C -0.087 4.087 12 H 0.080 0.920 13 C 0.056 3.944 14 N -0.676 5.676 15 C 0.082 3.918 16 C -0.153 4.153 17 C -0.166 4.166 18 C -0.168 4.168 19 H 0.269 0.731 20 H 0.028 0.972 21 H 0.033 0.967 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.334 0.666 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.066 -6.621 0.367 15.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.154 4.154 3 Si 0.735 3.265 4 H -0.207 1.207 5 H -0.218 1.218 6 H -0.190 1.190 7 C -0.434 4.434 8 H 0.095 0.905 9 O -0.249 6.249 10 C 0.020 3.980 11 C -0.107 4.107 12 H 0.098 0.902 13 C -0.073 4.073 14 N -0.302 5.302 15 C -0.048 4.048 16 C -0.155 4.155 17 C -0.203 4.203 18 C -0.205 4.205 19 H 0.079 0.921 20 H 0.046 0.954 21 H 0.051 0.949 22 H 0.102 0.898 23 H 0.098 0.902 24 H 0.149 0.851 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.119 0.881 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 14.090 -6.505 -0.379 15.524 hybrid contribution -0.077 0.620 1.079 1.246 sum 14.013 -5.885 0.699 15.215 Atomic orbital electron populations 1.69687 1.05350 1.27182 1.53758 1.24319 0.94859 0.98231 0.97998 0.86147 0.79907 0.82256 0.78176 1.20682 1.21784 1.19039 1.20351 0.78500 0.95032 1.49502 0.90515 1.85190 1.20460 1.25258 1.94028 1.21948 0.89618 0.87809 0.98623 1.22075 0.95420 0.93818 0.99372 0.90159 1.23102 0.87572 1.00531 0.96075 1.62864 1.08660 1.03122 1.55515 1.22186 0.95258 0.92097 0.95305 1.22304 1.00009 0.93297 0.99862 1.22957 0.99205 0.96246 1.01861 1.22886 1.01793 1.03484 0.92336 0.92136 0.95429 0.94908 0.89848 0.90190 0.85109 0.90479 0.91747 0.88101 0.88832 0.88957 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.68 13.96 55.48 0.77 -27.90 16 2 C 0.04 1.29 5.49 -17.51 -0.10 1.20 16 3 Si 0.91 23.43 28.62 -169.99 -4.86 18.57 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.36 -10.63 10.35 30.88 0.32 -10.31 16 8 H 0.08 2.40 8.00 -52.49 -0.42 1.98 16 9 O -0.33 -8.84 8.51 -16.48 -0.14 -8.98 16 10 C 0.10 2.06 4.24 37.16 0.16 2.22 16 11 C -0.09 -1.49 3.20 -89.01 -0.29 -1.77 16 12 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 13 C 0.06 0.92 6.92 -1.78 -0.01 0.91 16 14 N -0.68 -9.31 7.52 -109.98 -0.83 -10.14 16 15 C 0.08 1.02 7.32 -2.81 -0.02 1.00 16 16 C -0.15 -2.13 2.41 -154.35 -0.37 -2.50 16 17 C -0.17 -2.15 9.63 -27.00 -0.26 -2.41 16 18 C -0.17 -2.06 10.30 -27.01 -0.28 -2.34 16 19 H 0.27 7.88 8.31 -40.82 -0.34 7.54 16 20 H 0.03 0.58 7.35 -51.93 -0.38 0.20 16 21 H 0.03 0.69 8.00 -51.93 -0.42 0.28 16 22 H 0.08 1.45 7.97 -51.93 -0.41 1.04 16 23 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 24 H 0.33 4.06 8.92 -39.29 -0.35 3.71 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.10 1.45 6.52 -51.93 -0.34 1.11 16 28 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 251.85 15.07 3.80 3.80 Total: -1.00 -31.68 251.85 -6.52 -38.20 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.41 Total: 0.46 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -0.85 Total: -14.01 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: -0.05 Total: -38.04 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.14 Total: -8.98 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -4.86 Total: 18.57 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -31.68 -6.52 -38.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282140.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.786 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds