Wall clock time and date at job start Mon Mar 30 2020 02:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86801 * 119.99623 * 2 1 4 4 H 1.48500 * 109.47099 * 269.99936 * 3 2 1 5 5 H 1.48493 * 109.47552 * 30.00034 * 3 2 1 6 6 H 1.48499 * 109.46984 * 150.00152 * 3 2 1 7 7 C 1.38636 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99851 * 359.97438 * 7 2 1 9 9 O 1.34921 * 119.99981 * 179.97438 * 7 2 1 10 10 C 1.42905 * 116.99780 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46728 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.68143 * 54.30316 * 11 10 9 13 13 C 1.55089 * 110.76553 * 291.04690 * 11 10 9 14 14 N 1.48596 * 103.33824 * 204.85407 * 13 11 10 15 15 C 1.48094 * 105.86835 * 38.84002 * 14 13 11 16 16 C 1.53684 * 106.78026 * 334.63721 * 15 14 13 17 17 C 1.52317 * 121.65332 * 145.27688 * 16 15 14 18 18 C 1.52310 * 121.81007 * 217.74601 * 16 15 14 19 19 H 0.97005 * 120.00668 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47187 * 300.00020 * 10 9 7 21 21 H 1.09001 * 109.46558 * 60.00067 * 10 9 7 22 22 H 1.08995 * 110.64570 * 323.31943 * 13 11 10 23 23 H 1.08996 * 110.64703 * 86.23237 * 13 11 10 24 24 H 1.00902 * 111.00240 * 278.29243 * 14 13 11 25 25 H 1.09005 * 109.99894 * 94.11499 * 15 14 13 26 26 H 1.09007 * 110.00420 * 215.41915 * 15 14 13 27 27 H 1.08997 * 117.51429 * 218.63796 * 17 16 15 28 28 H 1.08997 * 117.52061 * 3.76591 * 17 16 15 29 29 H 1.08997 * 117.51223 * 356.48461 * 18 16 15 30 30 H 1.08991 * 117.51496 * 141.56113 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4403 0.7000 7 6 2.0091 -1.2006 -0.0005 8 1 1.4691 -2.1359 -0.0005 9 8 3.3583 -1.2005 -0.0011 10 6 4.0071 -2.4738 -0.0010 11 6 5.5238 -2.2732 -0.0023 12 1 5.8281 -1.6324 0.8254 13 6 5.9996 -1.6854 -1.3563 14 7 7.4174 -2.1224 -1.4405 15 6 7.4494 -3.4999 -0.8977 16 6 6.2536 -3.6276 0.0591 17 6 5.4825 -4.9331 0.2050 18 6 6.3462 -4.4158 1.3591 19 1 -0.4851 0.8400 0.0004 20 1 3.7146 -3.0306 0.8892 21 1 3.7138 -3.0309 -0.8908 22 1 5.4198 -2.1007 -2.1805 23 1 5.9300 -0.5977 -1.3488 24 1 8.0169 -1.5098 -0.9081 25 1 7.3594 -4.2224 -1.7089 26 1 8.3794 -3.6646 -0.3534 27 1 4.4003 -4.8688 0.3179 28 1 5.8475 -5.7981 -0.3486 29 1 7.2792 -4.9407 1.5643 30 1 5.8327 -4.0110 2.2311 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885282140.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:33 Heat of formation + Delta-G solvation = -31.238661 kcal Electronic energy + Delta-G solvation = -12694.652272 eV Core-core repulsion = 10490.115171 eV Total energy + Delta-G solvation = -2204.537100 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.75655 -38.27035 -35.80824 -34.22404 -31.74064 -27.55396 -26.78073 -25.06443 -23.51586 -22.25440 -20.17222 -19.26192 -17.94137 -17.22490 -16.32979 -16.22406 -15.59078 -15.54887 -14.51318 -14.38035 -14.20042 -13.68980 -13.50864 -12.94983 -12.81405 -12.40737 -12.26922 -11.89224 -11.86708 -11.62511 -11.48652 -11.22758 -10.64019 -10.41710 -9.62853 -8.31164 -6.02473 1.35891 1.39863 1.57651 2.40845 2.73549 3.01205 3.14063 3.28417 3.59786 3.84114 3.89651 4.06071 4.23811 4.39284 4.52937 4.56646 4.69175 4.73384 4.76557 4.86443 5.01462 5.02405 5.12832 5.19415 5.22770 5.53239 5.67487 6.09728 6.43231 7.07350 7.75140 8.84770 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048818 B = 0.009836 C = 0.008715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.420897 B = 2845.954688 C = 3212.235408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.014 4.014 3 Si 0.978 3.022 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.362 4.362 8 H 0.045 0.955 9 O -0.345 6.345 10 C 0.096 3.904 11 C -0.084 4.084 12 H 0.075 0.925 13 C 0.059 3.941 14 N -0.673 5.673 15 C 0.086 3.914 16 C -0.162 4.162 17 C -0.171 4.171 18 C -0.152 4.152 19 H 0.275 0.725 20 H 0.024 0.976 21 H 0.028 0.972 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.346 0.654 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.520 -6.506 0.493 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.207 4.207 3 Si 0.801 3.199 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.440 4.440 8 H 0.063 0.937 9 O -0.261 6.261 10 C 0.019 3.981 11 C -0.104 4.104 12 H 0.093 0.907 13 C -0.071 4.071 14 N -0.300 5.300 15 C -0.044 4.044 16 C -0.163 4.163 17 C -0.208 4.208 18 C -0.189 4.189 19 H 0.084 0.916 20 H 0.042 0.958 21 H 0.046 0.954 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.162 0.838 25 H 0.100 0.900 26 H 0.111 0.889 27 H 0.096 0.904 28 H 0.135 0.865 29 H 0.141 0.859 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 16.561 -6.410 -0.251 17.760 hybrid contribution -0.868 0.462 1.048 1.437 sum 15.693 -5.948 0.797 16.801 Atomic orbital electron populations 1.69798 1.06986 1.28584 1.54606 1.25246 0.95834 1.02114 0.97531 0.85086 0.78517 0.77484 0.78766 1.19552 1.20398 1.18655 1.20323 0.80007 0.94130 1.49564 0.93716 1.85134 1.18563 1.28298 1.94110 1.22193 0.92074 0.85788 0.98082 1.22033 0.92321 0.96282 0.99771 0.90662 1.22943 0.89246 0.99875 0.94994 1.62815 1.06863 1.04128 1.56168 1.22254 0.95659 0.91185 0.95276 1.22298 1.00444 0.91722 1.01865 1.23009 0.98146 0.96674 1.02982 1.22980 1.02572 1.02202 0.91130 0.91575 0.95826 0.95410 0.91293 0.91051 0.83805 0.90008 0.88931 0.90382 0.86495 0.85882 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.67 13.96 21.61 0.30 -60.36 16 2 C -0.01 -0.86 5.49 84.83 0.47 -0.39 16 3 Si 0.98 48.21 28.62 68.60 1.96 50.17 16 4 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.26 -12.66 7.11 99.48 0.71 -11.96 16 7 C -0.36 -22.21 10.35 67.92 0.70 -21.50 16 8 H 0.04 2.94 8.00 -2.91 -0.02 2.92 16 9 O -0.34 -18.53 8.51 -81.90 -0.70 -19.22 16 10 C 0.10 4.11 4.24 71.98 0.31 4.42 16 11 C -0.08 -2.81 3.20 -9.75 -0.03 -2.84 16 12 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 13 C 0.06 1.88 6.92 86.69 0.60 2.48 16 14 N -0.67 -16.88 7.52 -501.86 -3.77 -20.65 16 15 C 0.09 1.86 7.32 86.30 0.63 2.49 16 16 C -0.16 -4.15 2.41 -52.08 -0.13 -4.27 16 17 C -0.17 -4.16 9.63 30.42 0.29 -3.87 16 18 C -0.15 -3.31 10.30 30.42 0.31 -3.00 16 19 H 0.28 16.21 8.31 -92.70 -0.77 15.44 16 20 H 0.02 1.02 7.35 -2.39 -0.02 1.01 16 21 H 0.03 1.21 8.00 -2.39 -0.02 1.19 16 22 H 0.07 2.38 7.97 -2.39 -0.02 2.36 16 23 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 24 H 0.35 7.40 8.92 -89.69 -0.80 6.60 16 25 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.08 2.25 6.52 -2.39 -0.02 2.24 16 28 H 0.12 2.28 8.14 -2.39 -0.02 2.27 16 29 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -68.07 251.85 1.27 -66.81 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.32 Total: 9.74 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: 3.15 Total: -26.48 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -3.47 Total: -81.02 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.70 Total: -19.22 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 1.96 Total: 50.17 kcal Total: -68.07 1.27 -66.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885282140.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.568 kcal (2) G-P(sol) polarization free energy of solvation -68.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds