Wall clock time and date at job start Mon Mar 30 2020 02:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00273 * 2 1 4 4 H 1.48500 * 109.47043 * 270.00107 * 3 2 1 5 5 H 1.48505 * 109.47043 * 29.99885 * 3 2 1 6 6 H 1.48500 * 109.47146 * 149.99930 * 3 2 1 7 7 C 1.37876 * 119.99611 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00443 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99805 * 179.97438 * 7 2 1 10 10 H 1.08997 * 109.47323 * 299.99971 * 9 7 2 11 11 O 1.42904 * 109.47091 * 60.00315 * 9 7 2 12 12 C 1.53005 * 109.46840 * 179.97438 * 9 7 2 13 13 N 1.46903 * 109.46733 * 179.97438 * 12 9 7 14 14 C 1.48560 * 110.99621 * 169.99959 * 13 12 9 15 15 C 1.54383 * 104.59477 * 200.96227 * 14 13 12 16 16 H 1.09002 * 117.60344 * 244.71958 * 15 14 13 17 17 C 1.53001 * 118.12714 * 89.19883 * 15 14 13 18 18 C 1.54258 * 105.06054 * 23.85562 * 15 14 13 19 19 H 1.09000 * 121.79003 * 223.89035 * 18 15 14 20 20 C 1.48567 * 110.99964 * 54.58708 * 13 12 9 21 21 H 0.97005 * 119.99371 * 359.97438 * 1 2 3 22 22 H 0.96703 * 113.99801 * 59.99732 * 11 9 7 23 23 H 1.08999 * 109.47187 * 60.00476 * 12 9 7 24 24 H 1.08997 * 109.47164 * 300.00099 * 12 9 7 25 25 H 1.08999 * 110.41202 * 82.18313 * 14 13 12 26 26 H 1.08996 * 110.41469 * 319.73817 * 14 13 12 27 27 H 1.08993 * 117.44734 * 14.42264 * 17 15 14 28 28 H 1.09004 * 117.44324 * 159.13571 * 17 15 14 29 29 H 1.09002 * 110.40520 * 277.81954 * 20 13 12 30 30 H 1.08997 * 110.41119 * 40.13700 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8745 -0.6809 -0.8905 11 8 3.9883 -0.5198 1.1662 12 6 4.0214 -2.6367 0.0014 13 7 5.4904 -2.6367 0.0002 14 6 6.0229 -4.0023 0.2423 15 6 7.4652 -3.7743 0.7435 16 1 8.2805 -4.1398 0.1192 17 6 7.6871 -3.5990 2.2472 18 6 7.4657 -2.3463 1.3269 19 1 8.2746 -1.6439 1.1253 20 6 6.0238 -1.8316 1.1291 21 1 -0.4849 0.8401 0.0004 22 1 3.7032 -0.9228 1.9977 23 1 3.6578 -3.1515 -0.8879 24 1 3.6584 -3.1495 0.8920 25 1 6.0286 -4.5778 -0.6833 26 1 5.4320 -4.5113 1.0037 27 1 6.8697 -3.8789 2.9116 28 1 8.6896 -3.7857 2.6322 29 1 6.0300 -0.7726 0.8710 30 1 5.4316 -1.9993 2.0287 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931709199.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:52 Heat of formation + Delta-G solvation = -4.333627 kcal Electronic energy + Delta-G solvation = -12900.356630 eV Core-core repulsion = 10696.986220 eV Total energy + Delta-G solvation = -2203.370410 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.49915 -36.40020 -33.25193 -32.27315 -28.87235 -27.99896 -25.49598 -22.59310 -20.64480 -20.40243 -19.63938 -17.30419 -16.12508 -14.97569 -14.54339 -14.43053 -14.26939 -13.48736 -13.10914 -12.81949 -12.42658 -11.84740 -11.77651 -11.31240 -10.98377 -10.94858 -10.63650 -10.36207 -9.93781 -9.89277 -9.70532 -9.02531 -8.61648 -8.17192 -7.93030 -6.13053 -4.24485 3.40767 3.49630 3.68802 3.75378 4.41995 4.54082 4.75213 4.89164 5.16069 5.20249 5.30953 5.49693 5.74445 5.75899 5.87905 5.94111 6.00571 6.11416 6.13642 6.30105 6.41771 6.58063 6.76407 7.25831 7.33364 7.48425 7.72006 8.27252 8.81181 8.98217 9.51429 10.97544 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.066514 B = 0.009832 C = 0.009069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.865377 B = 2847.048835 C = 3086.699413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.083 3.917 3 Si 0.874 3.126 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.217 1.217 7 C -0.565 4.565 8 H 0.071 0.929 9 C 0.197 3.803 10 H 0.063 0.937 11 O -0.578 6.578 12 C 0.030 3.970 13 N -0.512 5.512 14 C 0.057 3.943 15 C -0.166 4.166 16 H 0.109 0.891 17 C -0.157 4.157 18 C -0.170 4.170 19 H 0.112 0.888 20 C 0.076 3.924 21 H 0.265 0.735 22 H 0.352 0.648 23 H 0.075 0.925 24 H 0.029 0.971 25 H 0.078 0.922 26 H 0.039 0.961 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.166 -5.337 3.303 14.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.121 4.121 3 Si 0.700 3.300 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.139 1.139 7 C -0.602 4.602 8 H 0.089 0.911 9 C 0.139 3.861 10 H 0.081 0.919 11 O -0.385 6.385 12 C -0.098 4.098 13 N -0.237 5.237 14 C -0.071 4.071 15 C -0.184 4.184 16 H 0.127 0.873 17 C -0.194 4.194 18 C -0.189 4.189 19 H 0.130 0.870 20 C -0.051 4.051 21 H 0.074 0.926 22 H 0.199 0.801 23 H 0.094 0.906 24 H 0.048 0.952 25 H 0.096 0.904 26 H 0.058 0.942 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.418 -4.639 2.305 14.383 hybrid contribution -0.408 -0.001 0.965 1.048 sum 13.010 -4.640 3.270 14.195 Atomic orbital electron populations 1.69964 1.06819 1.27482 1.48783 1.25005 0.94630 1.00041 0.92455 0.86982 0.82952 0.81609 0.78415 1.21394 1.22394 1.13887 1.21478 0.89771 0.94826 1.54153 0.91095 1.19781 0.93418 0.87124 0.85756 0.91937 1.86755 1.76896 1.58378 1.16428 1.22950 0.85302 1.01068 1.00510 1.65629 1.09489 1.06798 1.41749 1.22666 0.92425 0.92360 0.99633 1.23391 0.98295 1.01425 0.95333 0.87304 1.23642 1.02206 1.01148 0.92422 1.24344 0.99813 0.90162 1.04596 0.86968 1.22768 0.89920 0.99862 0.92521 0.92581 0.80107 0.90644 0.95229 0.90359 0.94232 0.89299 0.88455 0.87931 0.93854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.37 13.96 55.43 0.77 -26.59 16 2 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 3 Si 0.87 21.91 26.99 -169.99 -4.59 17.32 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.22 -5.25 5.30 56.52 0.30 -4.95 16 7 C -0.56 -15.69 9.34 -34.44 -0.32 -16.02 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C 0.20 4.59 2.43 -27.88 -0.07 4.52 16 10 H 0.06 1.55 7.57 -51.93 -0.39 1.16 16 11 O -0.58 -12.64 6.47 -35.23 -0.23 -12.87 16 12 C 0.03 0.60 4.85 -3.82 -0.02 0.58 16 13 N -0.51 -9.23 5.49 -229.96 -1.26 -10.49 16 14 C 0.06 0.86 6.29 -2.18 -0.01 0.85 16 15 C -0.17 -2.18 6.98 -89.24 -0.62 -2.81 16 16 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 17 C -0.16 -1.86 10.29 -24.56 -0.25 -2.11 16 18 C -0.17 -2.38 7.29 -87.07 -0.63 -3.02 16 19 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 20 C 0.08 1.29 4.47 -2.18 -0.01 1.28 16 21 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 22 H 0.35 6.97 8.33 45.56 0.38 7.35 16 23 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 24 H 0.03 0.59 7.88 -51.93 -0.41 0.18 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.04 0.60 7.81 -51.93 -0.41 0.19 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.10 1.91 6.80 -51.93 -0.35 1.56 16 30 H 0.04 0.74 6.86 -51.93 -0.36 0.38 16 LS Contribution 240.25 15.07 3.62 3.62 Total: -1.00 -30.18 240.25 -7.45 -37.64 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -3.73 Total: 5.80 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -2.04 Total: -14.42 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.49 Total: -37.08 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.23 Total: -12.87 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.59 Total: 17.32 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.18 -7.45 -37.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931709199.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.302 kcal (2) G-P(sol) polarization free energy of solvation -30.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds