Wall clock time and date at job start Mon Mar 30 2020 02:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00273 * 2 1 4 4 H 1.48500 * 109.47043 * 270.00107 * 3 2 1 5 5 H 1.48505 * 109.47043 * 29.99885 * 3 2 1 6 6 H 1.48500 * 109.47146 * 149.99930 * 3 2 1 7 7 C 1.37876 * 119.99611 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00443 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99805 * 179.97438 * 7 2 1 10 10 H 1.08997 * 109.47323 * 299.99971 * 9 7 2 11 11 O 1.42904 * 109.47091 * 60.00315 * 9 7 2 12 12 C 1.53005 * 109.46840 * 179.97438 * 9 7 2 13 13 N 1.46903 * 109.46733 * 179.97438 * 12 9 7 14 14 C 1.48560 * 110.99621 * 169.99959 * 13 12 9 15 15 C 1.54383 * 104.59477 * 200.96227 * 14 13 12 16 16 H 1.09002 * 117.60344 * 244.71958 * 15 14 13 17 17 C 1.53001 * 118.12714 * 89.19883 * 15 14 13 18 18 C 1.54258 * 105.06054 * 23.85562 * 15 14 13 19 19 H 1.09000 * 121.79003 * 223.89035 * 18 15 14 20 20 C 1.48567 * 110.99964 * 54.58708 * 13 12 9 21 21 H 0.97005 * 119.99371 * 359.97438 * 1 2 3 22 22 H 0.96703 * 113.99801 * 59.99732 * 11 9 7 23 23 H 1.08999 * 109.47187 * 60.00476 * 12 9 7 24 24 H 1.08997 * 109.47164 * 300.00099 * 12 9 7 25 25 H 1.08999 * 110.41202 * 82.18313 * 14 13 12 26 26 H 1.08996 * 110.41469 * 319.73817 * 14 13 12 27 27 H 1.08993 * 117.44734 * 14.42264 * 17 15 14 28 28 H 1.09004 * 117.44324 * 159.13571 * 17 15 14 29 29 H 1.09002 * 110.40520 * 277.81954 * 20 13 12 30 30 H 1.08997 * 110.41119 * 40.13700 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8745 -0.6809 -0.8905 11 8 3.9883 -0.5198 1.1662 12 6 4.0214 -2.6367 0.0014 13 7 5.4904 -2.6367 0.0002 14 6 6.0229 -4.0023 0.2423 15 6 7.4652 -3.7743 0.7435 16 1 8.2805 -4.1398 0.1192 17 6 7.6871 -3.5990 2.2472 18 6 7.4657 -2.3463 1.3269 19 1 8.2746 -1.6439 1.1253 20 6 6.0238 -1.8316 1.1291 21 1 -0.4849 0.8401 0.0004 22 1 3.7032 -0.9228 1.9977 23 1 3.6578 -3.1515 -0.8879 24 1 3.6584 -3.1495 0.8920 25 1 6.0286 -4.5778 -0.6833 26 1 5.4320 -4.5113 1.0037 27 1 6.8697 -3.8789 2.9116 28 1 8.6896 -3.7857 2.6322 29 1 6.0300 -0.7726 0.8710 30 1 5.4316 -1.9993 2.0287 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931709199.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:52 Heat of formation + Delta-G solvation = -27.003981 kcal Electronic energy + Delta-G solvation = -12901.339690 eV Core-core repulsion = 10696.986220 eV Total energy + Delta-G solvation = -2204.353471 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.76475 -38.09195 -34.70458 -34.41550 -30.66613 -29.22114 -27.25950 -24.09834 -22.20102 -21.66212 -20.85169 -19.35851 -17.35906 -16.89262 -16.32090 -16.15988 -15.68139 -15.01776 -14.61449 -14.47022 -13.85746 -13.55563 -13.16551 -12.94006 -12.65379 -12.61217 -12.09134 -11.98328 -11.76098 -11.14487 -10.97248 -10.81746 -10.75608 -10.00286 -9.32874 -8.37340 -6.52576 1.40502 1.45057 1.74809 2.43038 2.67496 3.00512 3.11131 3.63812 3.79900 3.94344 4.10283 4.22473 4.35209 4.39985 4.49992 4.68383 4.74525 4.88045 4.95014 5.03726 5.20691 5.29171 5.36064 5.40422 5.52173 5.94579 6.06979 6.14226 6.59803 7.12090 7.29758 8.76815 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.066514 B = 0.009832 C = 0.009069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.865377 B = 2847.048835 C = 3086.699413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.029 3.971 3 Si 0.942 3.058 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.035 0.965 9 C 0.208 3.792 10 H 0.052 0.948 11 O -0.573 6.573 12 C 0.043 3.957 13 N -0.524 5.524 14 C 0.053 3.947 15 C -0.164 4.164 16 H 0.129 0.871 17 C -0.135 4.135 18 C -0.183 4.183 19 H 0.124 0.876 20 C 0.075 3.925 21 H 0.267 0.733 22 H 0.364 0.636 23 H 0.068 0.932 24 H 0.027 0.973 25 H 0.086 0.914 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.126 0.874 29 H 0.082 0.918 30 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.710 -5.471 3.954 17.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.171 4.171 3 Si 0.766 3.234 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.123 1.123 7 C -0.605 4.605 8 H 0.054 0.946 9 C 0.150 3.850 10 H 0.070 0.930 11 O -0.380 6.380 12 C -0.086 4.086 13 N -0.248 5.248 14 C -0.075 4.075 15 C -0.183 4.183 16 H 0.146 0.854 17 C -0.172 4.172 18 C -0.202 4.202 19 H 0.142 0.858 20 C -0.052 4.052 21 H 0.076 0.924 22 H 0.211 0.789 23 H 0.086 0.914 24 H 0.045 0.955 25 H 0.104 0.896 26 H 0.057 0.943 27 H 0.105 0.895 28 H 0.144 0.856 29 H 0.100 0.900 30 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.979 -4.792 2.966 16.944 hybrid contribution -1.220 -0.049 0.772 1.444 sum 14.760 -4.841 3.738 15.977 Atomic orbital electron populations 1.70086 1.08538 1.28471 1.50759 1.25875 0.95289 1.03701 0.92251 0.85945 0.82006 0.77137 0.78318 1.21418 1.22445 1.12338 1.21798 0.92252 0.93362 1.53130 0.94628 1.19469 0.90462 0.89154 0.85912 0.92990 1.86697 1.76424 1.58384 1.16531 1.22624 0.87268 0.98580 1.00103 1.65592 1.07528 1.08958 1.42754 1.22745 0.93776 0.90681 1.00283 1.23460 0.97356 1.00648 0.96793 0.85358 1.23760 1.03720 0.98261 0.91435 1.24282 0.98057 0.90948 1.06938 0.85826 1.22648 0.92040 0.98738 0.91746 0.92394 0.78852 0.91369 0.95458 0.89568 0.94280 0.89536 0.85574 0.89964 0.94330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.72 13.96 21.45 0.30 -58.42 16 2 C 0.03 1.67 5.47 84.65 0.46 2.13 16 3 Si 0.94 45.46 26.99 68.60 1.85 47.31 16 4 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 6 H -0.20 -9.16 5.30 99.48 0.53 -8.64 16 7 C -0.57 -32.09 9.34 25.60 0.24 -31.85 16 8 H 0.04 2.21 7.99 -2.91 -0.02 2.19 16 9 C 0.21 9.65 2.43 29.85 0.07 9.73 16 10 H 0.05 2.55 7.57 -2.39 -0.02 2.53 16 11 O -0.57 -24.33 6.47 -148.98 -0.96 -25.29 16 12 C 0.04 1.71 4.85 86.30 0.42 2.13 16 13 N -0.52 -18.17 5.49 -881.47 -4.84 -23.01 16 14 C 0.05 1.47 6.29 86.45 0.54 2.02 16 15 C -0.16 -3.76 6.98 -9.90 -0.07 -3.83 16 16 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 17 C -0.13 -2.66 10.29 32.00 0.33 -2.33 16 18 C -0.18 -4.58 7.29 -8.49 -0.06 -4.64 16 19 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 20 C 0.08 2.42 4.47 86.45 0.39 2.80 16 21 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 22 H 0.36 13.94 8.33 -74.06 -0.62 13.32 16 23 H 0.07 2.79 8.14 -2.39 -0.02 2.78 16 24 H 0.03 1.09 7.88 -2.39 -0.02 1.07 16 25 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.04 1.10 7.81 -2.39 -0.02 1.08 16 27 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.13 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.08 2.96 6.80 -2.39 -0.02 2.94 16 30 H 0.04 1.25 6.86 -2.39 -0.02 1.23 16 Total: -1.00 -64.49 240.25 -1.00 -65.49 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.33 Total: 17.77 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 2.32 Total: -23.85 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -4.54 Total: -81.43 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.96 Total: -25.29 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.85 Total: 47.31 kcal Total: -64.49 -1.00 -65.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931709199.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.485 kcal (2) G-P(sol) polarization free energy of solvation -64.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds