Wall clock time and date at job start Mon Mar 30 2020 02:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.46630 * 2 1 4 4 N 1.40449 * 126.82619 * 270.16926 * 3 2 1 5 5 C 1.30709 * 106.79455 * 180.26298 * 4 3 2 6 6 N 1.33245 * 108.94766 * 359.75224 * 5 4 3 7 7 C 1.30836 * 109.82686 * 0.02562 * 6 5 4 8 8 C 1.50697 * 125.95839 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.46613 * 195.02434 * 8 7 6 10 10 O 1.42905 * 109.46996 * 315.02023 * 8 7 6 11 11 C 1.50698 * 109.47576 * 75.02467 * 8 7 6 12 12 H 1.08004 * 119.99528 * 359.97438 * 11 8 7 13 13 C 1.37876 * 120.00356 * 180.02562 * 11 8 7 14 14 N 1.31518 * 119.99554 * 359.97438 * 13 11 8 15 15 Si 1.86790 * 120.00086 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.47385 * 59.99525 * 15 13 11 17 17 H 1.48500 * 109.47279 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47348 * 299.99599 * 15 13 11 19 19 H 1.08994 * 109.47185 * 59.99770 * 1 2 3 20 20 H 1.09000 * 109.46517 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46785 * 299.99716 * 1 2 3 22 22 H 1.08998 * 109.46785 * 240.00284 * 2 1 3 23 23 H 1.08999 * 109.46791 * 119.99952 * 2 1 3 24 24 H 1.07995 * 125.52621 * 179.71844 * 5 4 3 25 25 H 0.96696 * 114.00036 * 60.00342 * 10 8 7 26 26 H 0.97005 * 119.99198 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2957 2.1760 -1.1242 5 6 2.7116 3.3315 -0.6765 6 7 2.7051 3.3071 0.6557 7 6 2.2874 2.1406 1.0761 8 6 2.1385 1.7202 2.5156 9 1 2.0330 0.6366 2.5685 10 8 3.2955 2.1227 3.2514 11 6 0.9154 2.3734 3.1058 12 1 0.3070 3.0279 2.4993 13 6 0.5737 2.1364 4.4204 14 7 1.3150 1.3397 5.1590 15 14 -0.9419 2.9466 5.1521 16 1 -2.1446 2.5285 4.3877 17 1 -1.0887 2.5322 6.5705 18 1 -0.7979 4.4228 5.0796 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.0123 4.1698 -1.2873 25 1 3.4518 3.0769 3.2476 26 1 1.0743 1.1727 6.0838 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535767909.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:32 Heat of formation + Delta-G solvation = 9.287904 kcal Electronic energy + Delta-G solvation = -12630.423439 eV Core-core repulsion = 10324.103359 eV Total energy + Delta-G solvation = -2306.320080 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.93844 -37.68387 -35.90393 -34.34765 -32.31452 -31.04861 -29.03232 -25.55835 -24.77163 -22.53067 -21.16662 -19.27079 -18.08687 -16.75466 -16.67541 -16.42090 -15.93433 -15.12596 -14.86800 -14.70986 -13.79961 -13.47354 -13.28631 -13.02732 -12.94212 -12.77404 -12.17586 -12.14036 -11.56666 -10.88296 -10.85523 -10.64425 -10.61589 -10.26450 -8.21378 -6.47249 0.73136 1.41796 1.44436 1.48900 1.53591 2.09402 2.39719 3.05733 3.44690 3.63227 4.03409 4.06868 4.16188 4.25628 4.37353 4.75846 4.81957 5.21358 5.24491 5.47842 5.60186 5.66029 5.80829 5.99042 6.56834 7.16138 7.27579 7.35155 8.83022 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.037900 B = 0.012634 C = 0.011585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.603287 B = 2215.729591 C = 2416.249702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.117 3.883 3 N -0.379 5.379 4 N -0.354 5.354 5 C 0.186 3.814 6 N -0.575 5.575 7 C 0.272 3.728 8 C 0.309 3.691 9 H 0.067 0.933 10 O -0.564 6.564 11 C -0.570 4.570 12 H 0.047 0.953 13 C 0.041 3.959 14 N -0.888 5.888 15 Si 0.961 3.039 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.274 1.274 19 H 0.056 0.944 20 H 0.108 0.892 21 H 0.045 0.955 22 H 0.116 0.884 23 H 0.100 0.900 24 H 0.249 0.751 25 H 0.367 0.633 26 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.574 -1.842 -7.632 8.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.004 4.004 3 N -0.171 5.171 4 N -0.183 5.183 5 C -0.116 4.116 6 N -0.304 5.304 7 C -0.005 4.005 8 C 0.248 3.752 9 H 0.084 0.916 10 O -0.367 6.367 11 C -0.609 4.609 12 H 0.065 0.935 13 C -0.164 4.164 14 N -0.523 5.523 15 Si 0.785 3.215 16 H -0.193 1.193 17 H -0.201 1.201 18 H -0.199 1.199 19 H 0.075 0.925 20 H 0.127 0.873 21 H 0.064 0.936 22 H 0.134 0.866 23 H 0.118 0.882 24 H 0.265 0.735 25 H 0.213 0.787 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.475 -2.606 -7.903 8.452 hybrid contribution -0.744 0.920 0.438 1.262 sum -2.219 -1.686 -7.466 7.969 Atomic orbital electron populations 1.22104 0.93155 1.04569 1.01992 1.22048 0.96437 0.76430 1.05482 1.50669 1.49293 1.13798 1.03310 1.77759 1.25634 1.05553 1.09324 1.26633 0.97648 0.96873 0.90465 1.70382 1.26756 1.21062 1.12232 1.26174 0.92182 0.87310 0.94811 1.17876 0.85365 0.95517 0.76398 0.91594 1.86485 1.47625 1.27823 1.74736 1.21392 1.10756 1.31192 0.97561 0.93462 1.25714 0.99126 0.94631 0.96913 1.70141 1.38595 1.35174 1.08426 0.85588 0.79384 0.78944 0.77567 1.19292 1.20124 1.19899 0.92497 0.87296 0.93607 0.86578 0.88232 0.73500 0.78684 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.52 10.24 71.98 0.74 -3.78 15 2 C 0.12 3.57 6.98 86.38 0.60 4.17 15 3 N -0.38 -15.02 3.64 -338.49 -1.23 -16.25 15 4 N -0.35 -13.53 12.70 -61.25 -0.78 -14.31 15 5 C 0.19 6.86 13.03 180.77 2.36 9.21 15 6 N -0.57 -25.49 11.09 -191.78 -2.13 -27.61 15 7 C 0.27 12.41 6.79 138.22 0.94 13.35 15 8 C 0.31 15.60 3.21 29.10 0.09 15.70 15 9 H 0.07 3.41 6.80 -2.39 -0.02 3.39 15 10 O -0.56 -29.55 12.72 -148.98 -1.89 -31.44 15 11 C -0.57 -30.66 8.75 25.60 0.22 -30.44 15 12 H 0.05 2.61 7.74 -2.91 -0.02 2.59 15 13 C 0.04 2.17 5.40 84.65 0.46 2.63 15 14 N -0.89 -49.56 12.84 21.45 0.28 -49.28 15 15 Si 0.96 41.93 29.54 68.60 2.03 43.95 15 16 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 17 H -0.28 -11.62 7.11 99.48 0.71 -10.91 15 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 15 19 H 0.06 1.60 8.14 -2.39 -0.02 1.58 15 20 H 0.11 2.26 8.14 -2.39 -0.02 2.24 15 21 H 0.04 1.58 8.14 -2.39 -0.02 1.57 15 22 H 0.12 2.86 8.14 -2.39 -0.02 2.84 15 23 H 0.10 3.00 6.97 -2.39 -0.02 2.98 15 24 H 0.25 6.45 8.06 -2.91 -0.02 6.42 15 25 H 0.37 18.03 8.95 -74.06 -0.66 17.36 15 26 H 0.27 14.14 8.31 -92.70 -0.77 13.37 15 Total: -1.00 -64.70 237.62 2.21 -62.49 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.53 Total: 21.63 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 5.41 Total: 10.84 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -3.86 Total: -107.46 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -1.89 Total: -31.44 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -64.70 2.21 -62.49 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535767909.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.774 kcal (2) G-P(sol) polarization free energy of solvation -64.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds