Wall clock time and date at job start Mon Mar 30 2020 02:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47035 * 2 1 4 4 N 1.40439 * 126.82300 * 269.95622 * 3 2 1 5 5 C 1.30713 * 106.79141 * 180.02562 * 4 3 2 6 6 N 1.33240 * 108.94642 * 359.76305 * 5 4 3 7 7 C 1.30834 * 109.82665 * 0.40297 * 6 5 4 8 8 C 1.50701 * 125.95918 * 179.86285 * 7 6 5 9 9 H 1.09002 * 109.47060 * 164.69180 * 8 7 6 10 10 O 1.42903 * 109.46878 * 44.69050 * 8 7 6 11 11 C 1.50699 * 109.47269 * 284.69033 * 8 7 6 12 12 H 1.08000 * 119.99792 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99902 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00126 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99745 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47438 * 0.02562 * 15 13 11 17 17 H 1.48491 * 109.47045 * 120.00577 * 15 13 11 18 18 H 1.48501 * 109.46950 * 240.00369 * 15 13 11 19 19 H 1.09002 * 109.47105 * 299.99768 * 1 2 3 20 20 H 1.09001 * 109.47265 * 59.99472 * 1 2 3 21 21 H 1.08995 * 109.47547 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46364 * 240.00181 * 2 1 3 23 23 H 1.08993 * 109.47003 * 120.00414 * 2 1 3 24 24 H 1.08001 * 125.52764 * 180.02562 * 5 4 3 25 25 H 0.96700 * 114.00234 * 299.99722 * 10 8 7 26 26 H 0.96999 * 120.00073 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2997 2.1745 -1.1242 5 6 2.7093 3.3323 -0.6765 6 7 2.6953 3.3105 0.6557 7 6 2.2867 2.1408 1.0761 8 6 2.1369 1.7207 2.5156 9 1 1.5336 0.8144 2.5686 10 8 1.4952 2.7639 3.2519 11 6 3.4977 1.4534 3.1052 12 1 4.3827 1.5760 2.4983 13 6 3.6131 1.0535 4.4196 14 7 2.5355 0.9047 5.1587 15 14 5.3001 0.7229 5.1506 16 1 6.3418 0.9618 4.1196 17 1 5.5270 1.6317 6.3028 18 1 5.3725 -0.6872 5.6106 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.8932 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 3.0064 4.1720 -1.2873 25 1 1.9775 3.6020 3.2480 26 1 2.6166 0.6230 6.0833 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535767913.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:34 Heat of formation + Delta-G solvation = 8.768283 kcal Electronic energy + Delta-G solvation = -12588.153098 eV Core-core repulsion = 10281.810485 eV Total energy + Delta-G solvation = -2306.342612 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.94321 -37.68736 -35.91559 -34.36028 -32.31749 -31.08032 -29.02064 -25.63264 -24.70875 -22.54008 -21.19484 -19.22130 -18.16299 -16.76548 -16.68617 -16.34147 -15.98423 -15.16853 -14.87527 -14.68848 -13.83648 -13.50905 -13.24783 -13.06140 -12.95333 -12.79584 -12.18418 -12.12121 -11.59836 -10.89119 -10.85831 -10.65394 -10.62490 -10.25310 -8.22469 -6.49030 0.72617 1.40390 1.43686 1.48772 1.56142 2.09025 2.39443 3.04388 3.44860 3.62930 4.01086 4.07712 4.15776 4.26017 4.35404 4.73503 4.80978 5.12215 5.23149 5.48120 5.59715 5.65669 5.79983 5.98489 6.56208 7.15671 7.26967 7.34405 8.82181 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.039830 B = 0.011928 C = 0.011120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.824671 B = 2346.884340 C = 2517.478990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.113 3.887 3 N -0.379 5.379 4 N -0.354 5.354 5 C 0.186 3.814 6 N -0.575 5.575 7 C 0.272 3.728 8 C 0.309 3.691 9 H 0.067 0.933 10 O -0.563 6.563 11 C -0.575 4.575 12 H 0.048 0.952 13 C 0.040 3.960 14 N -0.887 5.887 15 Si 0.965 3.035 16 H -0.273 1.273 17 H -0.275 1.275 18 H -0.270 1.270 19 H 0.043 0.957 20 H 0.059 0.941 21 H 0.110 0.890 22 H 0.114 0.886 23 H 0.099 0.901 24 H 0.249 0.751 25 H 0.367 0.633 26 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.073 -2.055 -7.600 7.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.008 4.008 3 N -0.171 5.171 4 N -0.183 5.183 5 C -0.116 4.116 6 N -0.304 5.304 7 C -0.005 4.005 8 C 0.248 3.752 9 H 0.084 0.916 10 O -0.366 6.366 11 C -0.613 4.613 12 H 0.066 0.934 13 C -0.165 4.165 14 N -0.523 5.523 15 Si 0.789 3.211 16 H -0.198 1.198 17 H -0.201 1.201 18 H -0.195 1.195 19 H 0.062 0.938 20 H 0.078 0.922 21 H 0.129 0.871 22 H 0.133 0.867 23 H 0.117 0.883 24 H 0.265 0.735 25 H 0.213 0.787 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.633 -2.583 -7.876 8.448 hybrid contribution 1.139 0.250 0.436 1.245 sum -0.494 -2.333 -7.440 7.813 Atomic orbital electron populations 1.22101 0.92758 1.04763 1.01908 1.22074 0.96521 0.76528 1.05630 1.50650 1.49205 1.13914 1.03295 1.77756 1.25739 1.05426 1.09335 1.26638 0.97702 0.96836 0.90458 1.70376 1.26152 1.21640 1.12248 1.26177 0.92113 0.87357 0.94814 1.17879 0.93770 0.87136 0.76399 0.91554 1.86485 1.52015 1.23401 1.74666 1.21511 0.92001 1.50116 0.97704 0.93415 1.25745 1.00600 0.93248 0.96902 1.70151 1.29868 1.43877 1.08413 0.85432 0.79197 0.78284 0.78209 1.19808 1.20087 1.19511 0.93813 0.92171 0.87106 0.86742 0.88299 0.73479 0.78706 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 10.24 71.98 0.74 -3.40 15 2 C 0.11 3.48 6.80 86.38 0.59 4.06 15 3 N -0.38 -15.08 3.64 -338.49 -1.23 -16.31 15 4 N -0.35 -13.57 12.70 -61.24 -0.78 -14.35 15 5 C 0.19 6.87 13.03 180.77 2.36 9.23 15 6 N -0.57 -25.56 11.09 -191.78 -2.13 -27.69 15 7 C 0.27 12.48 6.79 138.23 0.94 13.41 15 8 C 0.31 15.66 3.12 29.10 0.09 15.75 15 9 H 0.07 3.45 7.14 -2.39 -0.02 3.43 15 10 O -0.56 -29.58 12.72 -148.98 -1.89 -31.48 15 11 C -0.57 -31.11 8.75 25.60 0.22 -30.89 15 12 H 0.05 2.66 7.74 -2.91 -0.02 2.64 15 13 C 0.04 2.11 5.40 84.65 0.46 2.57 15 14 N -0.89 -49.59 12.84 21.45 0.28 -49.31 15 15 Si 0.96 42.03 29.54 68.60 2.03 44.06 15 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 15 17 H -0.28 -11.76 7.11 99.48 0.71 -11.06 15 18 H -0.27 -11.22 7.11 99.48 0.71 -10.51 15 19 H 0.04 1.35 8.14 -2.39 -0.02 1.33 15 20 H 0.06 1.57 8.14 -2.39 -0.02 1.55 15 21 H 0.11 2.11 8.14 -2.39 -0.02 2.09 15 22 H 0.11 2.90 8.14 -2.39 -0.02 2.89 15 23 H 0.10 3.12 7.38 -2.39 -0.02 3.10 15 24 H 0.25 6.47 8.06 -2.91 -0.02 6.44 15 25 H 0.37 18.06 8.94 -74.06 -0.66 17.40 15 26 H 0.27 14.06 8.31 -92.71 -0.77 13.29 15 Total: -1.00 -65.12 238.10 2.19 -62.93 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.53 Total: 21.39 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 5.39 Total: 10.75 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -3.86 Total: -107.66 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -1.89 Total: -31.48 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -65.12 2.19 -62.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535767913.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.699 kcal (2) G-P(sol) polarization free energy of solvation -65.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds