Wall clock time and date at job start Mon Mar 30 2020 02:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46822 * 111.00360 * 2 1 4 4 C 1.53297 * 109.40057 * 170.24962 * 3 2 1 5 5 C 1.51448 * 108.27685 * 53.76799 * 4 3 2 6 6 O 1.20757 * 121.12198 * 131.02275 * 5 4 3 7 7 C 1.51439 * 117.76425 * 311.04889 * 5 4 3 8 8 H 1.08999 * 109.70950 * 289.24157 * 7 5 4 9 9 C 1.52998 * 109.70703 * 168.66176 * 7 5 4 10 10 C 1.50706 * 109.47348 * 65.58411 * 9 7 5 11 11 H 1.08005 * 119.99758 * 359.97438 * 10 9 7 12 12 C 1.37871 * 120.00102 * 179.97438 * 10 9 7 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47483 * 269.99808 * 14 12 10 16 16 H 1.48499 * 109.47134 * 30.00322 * 14 12 10 17 17 H 1.48507 * 109.46904 * 150.00145 * 14 12 10 18 18 C 1.46835 * 110.99645 * 235.31154 * 2 1 3 19 19 H 1.09000 * 109.47359 * 184.68705 * 1 2 3 20 20 H 1.09006 * 109.47089 * 304.68820 * 1 2 3 21 21 H 1.08995 * 109.47190 * 64.68144 * 1 2 3 22 22 H 1.08998 * 109.48327 * 290.23171 * 3 2 1 23 23 H 1.09005 * 109.48051 * 50.27169 * 3 2 1 24 24 H 1.09001 * 109.71094 * 173.48506 * 4 3 2 25 25 H 1.09002 * 109.70599 * 294.06216 * 4 3 2 26 26 H 1.09001 * 109.47671 * 305.58620 * 9 7 5 27 27 H 1.09006 * 109.47297 * 185.58340 * 9 7 5 28 28 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 29 29 H 1.09002 * 109.47769 * 69.77614 * 18 2 1 30 30 H 1.08995 * 109.48226 * 309.73794 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3707 0.0000 4 6 3.5081 1.3353 0.2449 5 6 4.1327 0.4057 -0.7747 6 8 5.0961 0.7435 -1.4196 7 6 3.5079 -0.9615 -0.9587 8 1 3.7090 -1.5784 -0.0830 9 6 4.0893 -1.6307 -2.2057 10 6 5.5557 -1.9049 -1.9913 11 1 6.0260 -1.6289 -1.0590 12 6 6.2968 -2.5079 -2.9853 13 7 5.7243 -2.8435 -4.1207 14 14 8.1145 -2.8470 -2.7197 15 1 8.9083 -1.6793 -3.1797 16 1 8.3686 -3.0804 -1.2754 17 1 8.5115 -4.0510 -3.4931 18 6 1.9951 -0.7802 -1.1272 19 1 -0.3634 -1.0242 0.0840 20 1 -0.3633 0.5849 0.8451 21 1 -0.3633 0.4395 -0.9289 22 1 1.7938 1.8374 -0.9642 23 1 1.5124 1.9455 0.7903 24 1 3.9224 2.3371 0.1315 25 1 3.7091 0.9661 1.2506 26 1 3.9649 -0.9705 -3.0640 27 1 3.5675 -2.5697 -2.3909 28 1 4.7805 -2.6671 -4.2587 29 1 1.7937 -0.2528 -2.0597 30 1 1.5121 -1.7570 -1.1501 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039220948.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:56 Heat of formation + Delta-G solvation = -45.199916 kcal Electronic energy + Delta-G solvation = -12830.689799 eV Core-core repulsion = 10625.547294 eV Total energy + Delta-G solvation = -2205.142506 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.50688 -36.98916 -33.88284 -31.53031 -31.28832 -26.91411 -25.36744 -23.26899 -22.10817 -21.07338 -18.36305 -16.70751 -15.74437 -15.16398 -15.01339 -14.50928 -14.08583 -13.64679 -13.49918 -12.73801 -12.47026 -12.12860 -11.85106 -11.49447 -11.27551 -11.19184 -10.86777 -10.65768 -10.44023 -10.04744 -9.80131 -8.58745 -8.44101 -8.28995 -8.16925 -6.23216 -3.88236 2.76595 3.52281 3.56805 3.71528 3.97109 4.64355 4.66474 5.07080 5.12339 5.26512 5.36268 5.48327 5.55259 5.59143 5.69391 5.82306 5.83686 5.89217 6.04616 6.35533 6.40924 6.73488 7.06668 7.13958 7.32168 7.49875 8.28872 8.36890 8.58642 9.00717 9.79494 11.17977 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.057793 B = 0.009743 C = 0.008800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.372247 B = 2873.123907 C = 3181.003563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.549 5.549 3 C 0.065 3.935 4 C -0.169 4.169 5 C 0.354 3.646 6 O -0.422 6.422 7 C -0.118 4.118 8 H 0.099 0.901 9 C 0.022 3.978 10 C -0.575 4.575 11 H 0.046 0.954 12 C 0.012 3.988 13 N -0.920 5.920 14 Si 1.071 2.929 15 H -0.289 1.289 16 H -0.290 1.290 17 H -0.286 1.286 18 C 0.065 3.935 19 H 0.069 0.931 20 H 0.066 0.934 21 H 0.023 0.977 22 H 0.035 0.965 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.098 0.902 26 H 0.009 0.991 27 H 0.013 0.987 28 H 0.266 0.734 29 H 0.034 0.966 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.586 6.445 8.849 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.273 5.273 3 C -0.063 4.063 4 C -0.207 4.207 5 C 0.226 3.774 6 O -0.292 6.292 7 C -0.137 4.137 8 H 0.117 0.883 9 C -0.016 4.016 10 C -0.613 4.613 11 H 0.064 0.936 12 C -0.190 4.190 13 N -0.557 5.557 14 Si 0.900 3.100 15 H -0.216 1.216 16 H -0.216 1.216 17 H -0.212 1.212 18 C -0.063 4.063 19 H 0.088 0.912 20 H 0.084 0.916 21 H 0.042 0.958 22 H 0.053 0.947 23 H 0.097 0.903 24 H 0.102 0.898 25 H 0.117 0.883 26 H 0.027 0.973 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.556 5.773 8.210 12.563 hybrid contribution -1.776 1.089 0.113 2.086 sum -9.332 6.862 8.323 14.264 Atomic orbital electron populations 1.22329 0.87349 1.02314 1.00136 1.61814 1.07450 1.13188 1.44866 1.21992 0.94259 0.89602 1.00484 1.22454 0.95799 1.00845 1.01600 1.24757 0.82861 0.89294 0.80527 1.90427 1.22249 1.75622 1.40886 1.21935 0.92550 0.95831 1.03374 0.88326 1.19140 0.96991 0.94495 0.90935 1.21860 0.94003 1.41957 1.03527 0.93565 1.25753 1.06047 0.94244 0.92986 1.70761 1.13863 1.46121 1.24976 0.83515 0.74781 0.76572 0.75106 1.21573 1.21622 1.21165 1.22239 0.95477 0.97983 0.90561 0.91222 0.91554 0.95832 0.94719 0.90277 0.89751 0.88332 0.97278 0.96835 0.92389 0.94774 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.57 60.06 0.57 0.87 16 2 N -0.55 -7.77 4.83 -242.66 -1.17 -8.94 16 3 C 0.06 0.85 5.51 -3.71 -0.02 0.83 16 4 C -0.17 -2.53 6.35 -27.36 -0.17 -2.70 16 5 C 0.35 7.32 6.42 -28.30 -0.18 7.14 16 6 O -0.42 -10.67 15.74 6.00 0.09 -10.57 16 7 C -0.12 -2.46 2.58 -91.26 -0.24 -2.69 16 8 H 0.10 2.05 8.14 -51.93 -0.42 1.63 16 9 C 0.02 0.57 3.48 -27.88 -0.10 0.47 16 10 C -0.57 -17.07 7.65 -34.44 -0.26 -17.33 16 11 H 0.05 1.38 7.50 -52.48 -0.39 0.99 16 12 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 13 N -0.92 -29.28 13.65 55.43 0.76 -28.52 16 14 Si 1.07 26.99 29.90 -169.99 -5.08 21.90 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 C 0.06 1.09 4.81 -3.71 -0.02 1.08 16 19 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 20 H 0.07 0.61 8.04 -51.93 -0.42 0.19 16 21 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 22 H 0.03 0.47 8.10 -51.93 -0.42 0.05 16 23 H 0.08 0.83 8.01 -51.93 -0.42 0.41 16 24 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 26 H 0.01 0.25 8.00 -51.93 -0.42 -0.16 16 27 H 0.01 0.36 8.01 -51.93 -0.42 -0.06 16 28 H 0.27 8.39 7.22 -40.82 -0.29 8.09 16 29 H 0.03 0.59 8.10 -51.93 -0.42 0.17 16 30 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 LS Contribution 249.01 15.07 3.75 3.75 Total: -1.00 -33.69 249.01 -6.69 -40.38 By element: Atomic # 1 Polarization: -1.41 SS G_CDS: -4.52 Total: -5.93 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -0.51 Total: -12.07 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: -0.41 Total: -37.46 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 26.99 SS G_CDS: -5.08 Total: 21.90 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -33.69 -6.69 -40.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039220948.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.823 kcal (2) G-P(sol) polarization free energy of solvation -33.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds