Wall clock time and date at job start Mon Mar 30 2020 02:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46822 * 111.00360 * 2 1 4 4 C 1.53297 * 109.40057 * 170.24962 * 3 2 1 5 5 C 1.51448 * 108.27685 * 53.76799 * 4 3 2 6 6 O 1.20757 * 121.12198 * 131.02275 * 5 4 3 7 7 C 1.51439 * 117.76425 * 311.04889 * 5 4 3 8 8 H 1.08999 * 109.70950 * 289.24157 * 7 5 4 9 9 C 1.52998 * 109.70703 * 168.66176 * 7 5 4 10 10 C 1.50706 * 109.47348 * 65.58411 * 9 7 5 11 11 H 1.08005 * 119.99758 * 359.97438 * 10 9 7 12 12 C 1.37871 * 120.00102 * 179.97438 * 10 9 7 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47483 * 269.99808 * 14 12 10 16 16 H 1.48499 * 109.47134 * 30.00322 * 14 12 10 17 17 H 1.48507 * 109.46904 * 150.00145 * 14 12 10 18 18 C 1.46835 * 110.99645 * 235.31154 * 2 1 3 19 19 H 1.09000 * 109.47359 * 184.68705 * 1 2 3 20 20 H 1.09006 * 109.47089 * 304.68820 * 1 2 3 21 21 H 1.08995 * 109.47190 * 64.68144 * 1 2 3 22 22 H 1.08998 * 109.48327 * 290.23171 * 3 2 1 23 23 H 1.09005 * 109.48051 * 50.27169 * 3 2 1 24 24 H 1.09001 * 109.71094 * 173.48506 * 4 3 2 25 25 H 1.09002 * 109.70599 * 294.06216 * 4 3 2 26 26 H 1.09001 * 109.47671 * 305.58620 * 9 7 5 27 27 H 1.09006 * 109.47297 * 185.58340 * 9 7 5 28 28 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 29 29 H 1.09002 * 109.47769 * 69.77614 * 18 2 1 30 30 H 1.08995 * 109.48226 * 309.73794 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3707 0.0000 4 6 3.5081 1.3353 0.2449 5 6 4.1327 0.4057 -0.7747 6 8 5.0961 0.7435 -1.4196 7 6 3.5079 -0.9615 -0.9587 8 1 3.7090 -1.5784 -0.0830 9 6 4.0893 -1.6307 -2.2057 10 6 5.5557 -1.9049 -1.9913 11 1 6.0260 -1.6289 -1.0590 12 6 6.2968 -2.5079 -2.9853 13 7 5.7243 -2.8435 -4.1207 14 14 8.1145 -2.8470 -2.7197 15 1 8.9083 -1.6793 -3.1797 16 1 8.3686 -3.0804 -1.2754 17 1 8.5115 -4.0510 -3.4931 18 6 1.9951 -0.7802 -1.1272 19 1 -0.3634 -1.0242 0.0840 20 1 -0.3633 0.5849 0.8451 21 1 -0.3633 0.4395 -0.9289 22 1 1.7938 1.8374 -0.9642 23 1 1.5124 1.9455 0.7903 24 1 3.9224 2.3371 0.1315 25 1 3.7091 0.9661 1.2506 26 1 3.9649 -0.9705 -3.0640 27 1 3.5675 -2.5697 -2.3909 28 1 4.7805 -2.6671 -4.2587 29 1 1.7937 -0.2528 -2.0597 30 1 1.5121 -1.7570 -1.1501 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039220948.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:56 Heat of formation + Delta-G solvation = -69.452198 kcal Electronic energy + Delta-G solvation = -12831.741457 eV Core-core repulsion = 10625.547294 eV Total energy + Delta-G solvation = -2206.194163 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.05360 -38.38917 -35.96993 -33.40822 -32.51662 -28.71398 -26.56202 -25.21539 -23.63830 -22.55087 -19.91004 -18.94692 -17.12836 -16.77888 -16.23970 -15.82970 -15.70236 -15.51121 -15.01386 -14.61022 -13.79473 -13.65901 -13.35018 -13.04678 -12.90511 -12.52283 -12.46100 -12.26987 -12.10821 -11.97711 -11.73026 -10.68395 -10.58318 -10.12982 -9.39580 -8.66713 -6.31792 1.13540 1.47171 1.57632 1.75045 2.55028 2.85170 3.14519 3.24152 3.85796 3.95326 3.97304 4.18770 4.29784 4.50382 4.51218 4.64782 4.73055 4.76980 4.83953 4.95070 5.01956 5.05562 5.23661 5.37533 5.89457 6.01881 6.05306 6.19075 6.57873 6.77171 7.44203 8.74911 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.057793 B = 0.009743 C = 0.008800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.372247 B = 2873.123907 C = 3181.003563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.552 5.552 3 C 0.065 3.935 4 C -0.155 4.155 5 C 0.349 3.651 6 O -0.481 6.481 7 C -0.120 4.120 8 H 0.101 0.899 9 C 0.025 3.975 10 C -0.584 4.584 11 H 0.039 0.961 12 C -0.046 4.046 13 N -0.943 5.943 14 Si 1.116 2.884 15 H -0.282 1.282 16 H -0.268 1.268 17 H -0.276 1.276 18 C 0.077 3.923 19 H 0.074 0.926 20 H 0.093 0.907 21 H 0.026 0.974 22 H 0.030 0.970 23 H 0.121 0.879 24 H 0.100 0.900 25 H 0.121 0.879 26 H -0.023 1.023 27 H 0.002 0.998 28 H 0.253 0.747 29 H 0.023 0.977 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.462 7.292 10.958 16.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.276 5.276 3 C -0.063 4.063 4 C -0.193 4.193 5 C 0.225 3.775 6 O -0.355 6.355 7 C -0.139 4.139 8 H 0.119 0.881 9 C -0.013 4.013 10 C -0.622 4.622 11 H 0.057 0.943 12 C -0.242 4.242 13 N -0.582 5.582 14 Si 0.938 3.062 15 H -0.208 1.208 16 H -0.193 1.193 17 H -0.202 1.202 18 C -0.051 4.051 19 H 0.093 0.907 20 H 0.112 0.888 21 H 0.045 0.955 22 H 0.049 0.951 23 H 0.139 0.861 24 H 0.118 0.882 25 H 0.139 0.861 26 H -0.004 1.004 27 H 0.021 0.979 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.484 6.625 10.349 14.933 hybrid contribution -1.581 0.838 -0.521 1.863 sum -10.065 7.463 9.828 15.925 Atomic orbital electron populations 1.22446 0.84882 1.03388 1.01462 1.61796 1.09555 1.13514 1.42785 1.22130 0.92856 0.89431 1.01874 1.22420 0.96776 0.99939 1.00138 1.25498 0.81604 0.89825 0.80581 1.90405 1.24833 1.76753 1.43554 1.21849 0.95502 0.96182 1.00389 0.88082 1.18997 0.95866 0.93762 0.92635 1.22211 0.95781 1.41124 1.03097 0.94261 1.27320 1.10378 0.93914 0.92539 1.70893 1.13291 1.47898 1.26080 0.82952 0.69819 0.76958 0.76449 1.20796 1.19301 1.20162 1.21987 0.92550 0.99132 0.91439 0.90690 0.88832 0.95536 0.95142 0.86091 0.88183 0.86137 1.00425 0.97941 0.93775 0.95877 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.57 127.69 1.22 1.68 16 2 N -0.55 -13.85 4.83 -921.63 -4.45 -18.30 16 3 C 0.06 1.45 5.51 86.42 0.48 1.93 16 4 C -0.15 -4.20 6.35 30.19 0.19 -4.01 16 5 C 0.35 14.36 6.42 29.58 0.19 14.55 16 6 O -0.48 -24.92 15.74 -1.44 -0.02 -24.95 16 7 C -0.12 -5.03 2.58 -11.21 -0.03 -5.06 16 8 H 0.10 4.18 8.14 -2.39 -0.02 4.16 16 9 C 0.02 1.36 3.48 29.85 0.10 1.46 16 10 C -0.58 -35.60 7.65 25.60 0.20 -35.40 16 11 H 0.04 2.39 7.50 -2.91 -0.02 2.37 16 12 C -0.05 -2.82 5.46 84.65 0.46 -2.36 16 13 N -0.94 -61.73 13.65 21.45 0.29 -61.44 16 14 Si 1.12 54.56 29.90 68.60 2.05 56.61 16 15 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 18 C 0.08 2.53 4.81 86.41 0.42 2.94 16 19 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 20 H 0.09 1.24 8.04 -2.38 -0.02 1.22 16 21 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 22 H 0.03 0.73 8.10 -2.39 -0.02 0.71 16 23 H 0.12 1.82 8.01 -2.38 -0.02 1.80 16 24 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 26 H -0.02 -1.36 8.00 -2.39 -0.02 -1.38 16 27 H 0.00 0.13 8.01 -2.38 -0.02 0.11 16 28 H 0.25 16.69 7.22 -92.71 -0.67 16.02 16 29 H 0.02 0.80 8.10 -2.39 -0.02 0.78 16 30 H 0.09 2.73 8.07 -2.39 -0.02 2.71 16 Total: -1.00 -75.49 249.01 2.30 -73.19 By element: Atomic # 1 Polarization: -2.04 SS G_CDS: 1.20 Total: -0.84 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 3.23 Total: -24.27 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -4.16 Total: -79.74 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.02 Total: -24.95 kcal Atomic # 14 Polarization: 54.56 SS G_CDS: 2.05 Total: 56.61 kcal Total: -75.49 2.30 -73.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039220948.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.738 kcal (2) G-P(sol) polarization free energy of solvation -75.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds