Wall clock time and date at job start Mon Mar 30 2020 02:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50709 * 109.47181 * 2 1 4 4 O 1.21285 * 119.99706 * 2.77945 * 3 2 1 5 5 N 1.34768 * 120.00174 * 182.77871 * 3 2 1 6 6 C 1.46503 * 120.00227 * 5.94782 * 5 3 2 7 7 C 1.50704 * 109.46929 * 269.99798 * 6 5 3 8 8 H 1.08000 * 119.99933 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00378 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00183 * 179.97438 * 9 7 6 11 11 Si 1.86808 * 119.99739 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47161 * 89.99589 * 11 9 7 13 13 H 1.48493 * 109.47130 * 209.99816 * 11 9 7 14 14 H 1.48503 * 109.46682 * 330.00020 * 11 9 7 15 15 C 1.46504 * 120.00238 * 185.94103 * 5 3 2 16 16 C 1.52999 * 117.49323 * 16.39642 * 15 5 3 17 17 C 1.53005 * 117.49624 * 307.73841 * 15 5 3 18 18 H 1.08999 * 109.47171 * 180.02562 * 1 2 3 19 19 H 1.09002 * 109.47693 * 300.00339 * 1 2 3 20 20 H 1.09000 * 109.47271 * 60.00292 * 1 2 3 21 21 H 1.09002 * 109.47693 * 239.99661 * 2 1 3 22 22 H 1.09006 * 109.46942 * 119.99416 * 2 1 3 23 23 H 1.09002 * 109.47220 * 29.98790 * 6 5 3 24 24 H 1.08990 * 109.47600 * 149.99528 * 6 5 3 25 25 H 0.97004 * 119.99776 * 179.97438 * 10 9 7 26 26 H 1.08996 * 115.55104 * 162.06805 * 15 5 3 27 27 H 1.08991 * 117.50417 * 0.02562 * 16 15 5 28 28 H 1.08998 * 117.49581 * 145.02355 * 16 15 5 29 29 H 1.08994 * 117.49553 * 214.97556 * 17 15 5 30 30 H 1.08992 * 117.49868 * 359.97438 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2453 2.3423 0.0509 5 7 3.3560 1.6676 -0.0566 6 6 4.2994 0.5635 -0.2492 7 6 4.7143 0.0174 1.0927 8 1 4.3155 0.4498 1.9984 9 6 5.6030 -1.0343 1.1642 10 7 5.9655 -1.5105 2.3353 11 14 6.2923 -1.7828 -0.4024 12 1 7.5426 -1.0762 -0.7801 13 1 6.5853 -3.2209 -0.1767 14 1 5.2969 -1.6460 -1.4959 15 6 3.8516 3.0401 0.0744 16 6 2.8928 4.0856 0.6476 17 6 3.2417 4.1020 -0.8429 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 1.8934 -0.5139 -0.8899 22 1 1.8932 -0.5138 0.8901 23 1 3.8218 -0.2253 -0.8304 24 1 5.1787 0.9256 -0.7818 25 1 6.5905 -2.2506 2.3855 26 1 4.9085 3.1365 0.3228 27 1 1.8936 3.7523 0.9275 28 1 3.3190 4.8701 1.2727 29 1 3.8972 4.8972 -1.1975 30 1 2.4720 3.7794 -1.5440 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042548709.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:22 Heat of formation + Delta-G solvation = -7.240155 kcal Electronic energy + Delta-G solvation = -12861.390192 eV Core-core repulsion = 10657.893745 eV Total energy + Delta-G solvation = -2203.496447 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.65381 -35.96179 -34.32708 -32.33721 -31.68431 -27.71330 -24.51558 -22.44368 -21.82979 -21.37239 -18.22274 -17.07675 -16.27260 -15.55687 -14.95177 -14.23769 -14.14930 -13.24405 -12.93678 -12.67082 -12.24329 -12.04473 -11.71982 -11.41886 -11.19369 -10.90512 -10.82263 -10.59302 -10.46465 -10.04967 -9.78360 -9.58831 -8.78619 -8.67799 -7.54729 -6.23500 -4.25392 3.16269 3.23923 3.25268 3.27139 3.76652 4.24607 4.50902 5.04837 5.16978 5.45422 5.55395 5.60042 5.64503 5.71339 6.07041 6.09741 6.23186 6.27447 6.42316 6.47239 6.55360 6.64945 6.65654 6.86309 7.40617 7.48130 8.11739 8.40208 8.81612 8.94527 9.35600 10.89114 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.032937 B = 0.012624 C = 0.010571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.907307 B = 2217.468632 C = 2648.100649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.143 4.143 3 C 0.518 3.482 4 O -0.565 6.565 5 N -0.566 5.566 6 C 0.210 3.790 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.076 3.924 10 N -0.891 5.891 11 Si 0.873 3.127 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.264 1.264 15 C 0.086 3.914 16 C -0.197 4.197 17 C -0.196 4.196 18 H 0.054 0.946 19 H 0.057 0.943 20 H 0.053 0.947 21 H 0.085 0.915 22 H 0.106 0.894 23 H 0.037 0.963 24 H 0.030 0.970 25 H 0.267 0.733 26 H 0.126 0.874 27 H 0.135 0.865 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.499 3.666 -6.107 8.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.183 4.183 3 C 0.308 3.692 4 O -0.447 6.447 5 N -0.294 5.294 6 C 0.089 3.911 7 C -0.580 4.580 8 H 0.097 0.903 9 C -0.128 4.128 10 N -0.528 5.528 11 Si 0.699 3.301 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.189 1.189 15 C -0.019 4.019 16 C -0.234 4.234 17 C -0.234 4.234 18 H 0.073 0.927 19 H 0.077 0.923 20 H 0.072 0.928 21 H 0.104 0.896 22 H 0.124 0.876 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.077 0.923 26 H 0.143 0.857 27 H 0.152 0.848 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.749 3.956 -5.993 8.609 hybrid contribution 0.786 -0.567 -0.665 1.176 sum -3.963 3.389 -6.657 8.456 Atomic orbital electron populations 1.21510 0.94206 1.00755 1.02483 1.21640 0.96849 0.94568 1.05196 1.20675 0.81693 0.91540 0.75316 1.90435 1.55967 1.46005 1.52310 1.47386 1.06213 1.06625 1.69131 1.19834 0.88541 0.84674 0.98037 1.21394 1.27298 1.16994 0.92308 0.90315 1.24886 0.95677 0.96192 0.96018 1.69893 1.33337 1.25949 1.23628 0.86907 0.80166 0.79078 0.83945 1.19914 1.20845 1.18867 1.21549 0.97146 0.79295 1.03918 1.23746 1.03948 1.00245 0.95450 1.23204 1.03998 1.01875 0.94365 0.92703 0.92348 0.92811 0.89642 0.87583 0.94519 0.95156 0.92333 0.85664 0.84759 0.90055 0.89439 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.21 37.15 0.34 -1.68 16 2 C -0.14 -2.57 5.20 -27.88 -0.14 -2.71 16 3 C 0.52 10.66 7.46 -10.99 -0.08 10.58 16 4 O -0.57 -12.15 11.73 5.55 0.07 -12.09 16 5 N -0.57 -11.93 2.82 -167.46 -0.47 -12.41 16 6 C 0.21 4.69 4.03 -5.19 -0.02 4.67 16 7 C -0.54 -14.25 9.84 -34.44 -0.34 -14.59 16 8 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 9 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 10 N -0.89 -25.77 13.96 55.43 0.77 -25.00 16 11 Si 0.87 19.68 27.47 -169.99 -4.67 15.01 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 15 C 0.09 1.65 6.60 -67.93 -0.45 1.20 16 16 C -0.20 -3.53 9.63 -26.69 -0.26 -3.79 16 17 C -0.20 -3.30 9.88 -26.69 -0.26 -3.57 16 18 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 19 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 20 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 21 H 0.09 1.43 7.08 -51.93 -0.37 1.06 16 22 H 0.11 2.04 8.04 -51.93 -0.42 1.62 16 23 H 0.04 0.79 5.47 -51.93 -0.28 0.51 16 24 H 0.03 0.66 7.50 -51.93 -0.39 0.27 16 25 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.13 2.31 8.14 -51.93 -0.42 1.89 16 27 H 0.13 2.72 5.22 -52.12 -0.27 2.45 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.09 1.65 7.60 -51.93 -0.39 1.26 16 LS Contribution 250.08 15.07 3.77 3.77 Total: -1.00 -28.79 250.08 -6.09 -34.88 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -4.25 Total: 3.78 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -1.31 Total: -7.95 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.30 Total: -37.40 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.07 Total: -12.09 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.67 Total: 15.01 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.79 -6.09 -34.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042548709.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.638 kcal (2) G-P(sol) polarization free energy of solvation -28.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds