Wall clock time and date at job start Mon Mar 30 2020 02:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50709 * 109.47181 * 2 1 4 4 O 1.21285 * 119.99706 * 2.77945 * 3 2 1 5 5 N 1.34768 * 120.00174 * 182.77871 * 3 2 1 6 6 C 1.46503 * 120.00227 * 5.94782 * 5 3 2 7 7 C 1.50704 * 109.46929 * 269.99798 * 6 5 3 8 8 H 1.08000 * 119.99933 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00378 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00183 * 179.97438 * 9 7 6 11 11 Si 1.86808 * 119.99739 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47161 * 89.99589 * 11 9 7 13 13 H 1.48493 * 109.47130 * 209.99816 * 11 9 7 14 14 H 1.48503 * 109.46682 * 330.00020 * 11 9 7 15 15 C 1.46504 * 120.00238 * 185.94103 * 5 3 2 16 16 C 1.52999 * 117.49323 * 16.39642 * 15 5 3 17 17 C 1.53005 * 117.49624 * 307.73841 * 15 5 3 18 18 H 1.08999 * 109.47171 * 180.02562 * 1 2 3 19 19 H 1.09002 * 109.47693 * 300.00339 * 1 2 3 20 20 H 1.09000 * 109.47271 * 60.00292 * 1 2 3 21 21 H 1.09002 * 109.47693 * 239.99661 * 2 1 3 22 22 H 1.09006 * 109.46942 * 119.99416 * 2 1 3 23 23 H 1.09002 * 109.47220 * 29.98790 * 6 5 3 24 24 H 1.08990 * 109.47600 * 149.99528 * 6 5 3 25 25 H 0.97004 * 119.99776 * 179.97438 * 10 9 7 26 26 H 1.08996 * 115.55104 * 162.06805 * 15 5 3 27 27 H 1.08991 * 117.50417 * 0.02562 * 16 15 5 28 28 H 1.08998 * 117.49581 * 145.02355 * 16 15 5 29 29 H 1.08994 * 117.49553 * 214.97556 * 17 15 5 30 30 H 1.08992 * 117.49868 * 359.97438 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2453 2.3423 0.0509 5 7 3.3560 1.6676 -0.0566 6 6 4.2994 0.5635 -0.2492 7 6 4.7143 0.0174 1.0927 8 1 4.3155 0.4498 1.9984 9 6 5.6030 -1.0343 1.1642 10 7 5.9655 -1.5105 2.3353 11 14 6.2923 -1.7828 -0.4024 12 1 7.5426 -1.0762 -0.7801 13 1 6.5853 -3.2209 -0.1767 14 1 5.2969 -1.6460 -1.4959 15 6 3.8516 3.0401 0.0744 16 6 2.8928 4.0856 0.6476 17 6 3.2417 4.1020 -0.8429 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 1.8934 -0.5139 -0.8899 22 1 1.8932 -0.5138 0.8901 23 1 3.8218 -0.2253 -0.8304 24 1 5.1787 0.9256 -0.7818 25 1 6.5905 -2.2506 2.3855 26 1 4.9085 3.1365 0.3228 27 1 1.8936 3.7523 0.9275 28 1 3.3190 4.8701 1.2727 29 1 3.8972 4.8972 -1.1975 30 1 2.4720 3.7794 -1.5440 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042548709.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:22 Heat of formation + Delta-G solvation = -24.755846 kcal Electronic energy + Delta-G solvation = -12862.149729 eV Core-core repulsion = 10657.893745 eV Total energy + Delta-G solvation = -2204.255984 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.23423 -37.48284 -36.04687 -34.25614 -33.12687 -29.61545 -25.95024 -24.32509 -23.24952 -22.81753 -19.81111 -19.08914 -17.91959 -17.11891 -16.57624 -15.99175 -15.59888 -14.86047 -14.56870 -14.31677 -13.83153 -13.76715 -13.17326 -13.06564 -12.60991 -12.56362 -12.24217 -12.18107 -11.93227 -11.74465 -11.55656 -11.21931 -10.79697 -10.30219 -9.17773 -8.29796 -6.37838 1.41966 1.42606 1.52719 1.66790 2.21689 2.35100 3.03969 3.06883 3.66535 4.00397 4.15083 4.21665 4.27390 4.32426 4.66279 4.70919 4.80268 4.83550 4.92520 5.02993 5.08236 5.12916 5.33236 5.41541 5.43749 5.86732 6.17904 6.61022 6.69700 7.24396 7.35688 8.86586 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.032937 B = 0.012624 C = 0.010571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.907307 B = 2217.468632 C = 2648.100649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.142 4.142 3 C 0.506 3.494 4 O -0.577 6.577 5 N -0.574 5.574 6 C 0.218 3.782 7 C -0.541 4.541 8 H 0.028 0.972 9 C 0.018 3.982 10 N -0.943 5.943 11 Si 0.945 3.055 12 H -0.266 1.266 13 H -0.284 1.284 14 H -0.235 1.235 15 C 0.057 3.943 16 C -0.200 4.200 17 C -0.168 4.168 18 H 0.082 0.918 19 H 0.046 0.954 20 H 0.057 0.943 21 H 0.102 0.898 22 H 0.087 0.913 23 H 0.054 0.946 24 H 0.045 0.955 25 H 0.269 0.731 26 H 0.129 0.871 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.121 0.879 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.394 3.742 -8.419 10.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.181 4.181 3 C 0.297 3.703 4 O -0.460 6.460 5 N -0.302 5.302 6 C 0.097 3.903 7 C -0.580 4.580 8 H 0.046 0.954 9 C -0.181 4.181 10 N -0.583 5.583 11 Si 0.767 3.233 12 H -0.191 1.191 13 H -0.210 1.210 14 H -0.158 1.158 15 C -0.048 4.048 16 C -0.237 4.237 17 C -0.206 4.206 18 H 0.100 0.900 19 H 0.065 0.935 20 H 0.076 0.924 21 H 0.120 0.880 22 H 0.105 0.895 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.147 0.853 27 H 0.128 0.872 28 H 0.122 0.878 29 H 0.139 0.861 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.666 4.061 -8.313 10.362 hybrid contribution 0.711 -0.520 0.165 0.896 sum -3.956 3.540 -8.149 9.725 Atomic orbital electron populations 1.21476 0.92186 1.02458 1.02077 1.21681 0.98633 0.92835 1.04973 1.21182 0.81561 0.92555 0.74969 1.90437 1.56153 1.46672 1.52763 1.47460 1.06284 1.07198 1.69281 1.19680 0.89417 0.85488 0.95748 1.21504 1.26978 1.16916 0.92571 0.95391 1.25822 0.95917 0.96596 0.99740 1.70058 1.34621 1.26981 1.26608 0.85762 0.80063 0.77694 0.79795 1.19081 1.21015 1.15813 1.21812 0.97624 0.79018 1.06312 1.23700 1.02505 1.00423 0.97113 1.23209 1.03224 1.01039 0.93158 0.89954 0.93518 0.92402 0.87955 0.89455 0.92865 0.93736 0.92228 0.85326 0.87207 0.87822 0.86087 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.63 9.21 71.98 0.66 -2.97 16 2 C -0.14 -4.95 5.20 29.85 0.16 -4.79 16 3 C 0.51 20.62 7.46 87.66 0.65 21.28 16 4 O -0.58 -24.67 11.73 -3.05 -0.04 -24.71 16 5 N -0.57 -23.82 2.82 -802.13 -2.26 -26.09 16 6 C 0.22 9.42 4.03 85.63 0.35 9.77 16 7 C -0.54 -28.83 9.84 25.60 0.25 -28.58 16 8 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 9 C 0.02 0.97 5.47 84.65 0.46 1.43 16 10 N -0.94 -55.80 13.96 21.45 0.30 -55.50 16 11 Si 0.94 39.39 27.47 68.60 1.88 41.28 16 12 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 13 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 14 H -0.24 -8.66 6.54 99.48 0.65 -8.01 16 15 C 0.06 2.12 6.60 44.99 0.30 2.42 16 16 C -0.20 -6.98 9.63 30.62 0.29 -6.68 16 17 C -0.17 -5.27 9.88 30.62 0.30 -4.97 16 18 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 19 H 0.05 1.45 8.07 -2.39 -0.02 1.43 16 20 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 21 H 0.10 3.19 7.08 -2.39 -0.02 3.18 16 22 H 0.09 3.39 8.04 -2.38 -0.02 3.37 16 23 H 0.05 2.14 5.47 -2.39 -0.01 2.12 16 24 H 0.04 1.82 7.50 -2.39 -0.02 1.80 16 25 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 26 H 0.13 4.61 8.14 -2.39 -0.02 4.59 16 27 H 0.11 4.46 5.22 -5.28 -0.03 4.43 16 28 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 29 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 30 H 0.08 2.72 7.60 -2.39 -0.02 2.70 16 Total: -1.00 -62.74 250.08 4.35 -58.39 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 1.04 Total: 19.72 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 3.43 Total: -13.10 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -1.96 Total: -81.58 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.04 Total: -24.71 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 1.88 Total: 41.28 kcal Total: -62.74 4.35 -58.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042548709.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.637 kcal (2) G-P(sol) polarization free energy of solvation -62.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds