Wall clock time and date at job start Mon Mar 30 2020 02:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47542 * 2 1 4 4 N 1.46499 * 109.47263 * 180.02562 * 3 2 1 5 5 C 1.37095 * 120.00665 * 95.42783 * 4 3 2 6 6 H 1.07997 * 120.00164 * 213.93375 * 5 4 3 7 7 C 1.38952 * 120.00018 * 33.91957 * 5 4 3 8 8 N 1.31414 * 119.99555 * 22.16948 * 7 5 4 9 9 Si 1.86791 * 120.00369 * 201.88702 * 7 5 4 10 10 H 1.48508 * 109.46962 * 90.00193 * 9 7 5 11 11 H 1.48497 * 109.47382 * 210.00272 * 9 7 5 12 12 H 1.48498 * 109.47187 * 330.00648 * 9 7 5 13 13 C 1.34780 * 119.99656 * 275.41835 * 4 3 2 14 14 O 1.21296 * 120.00231 * 180.02562 * 13 4 3 15 15 C 1.50700 * 120.00136 * 0.02562 * 13 4 3 16 16 C 1.52997 * 117.49925 * 248.62088 * 15 13 4 17 17 C 1.52999 * 60.00199 * 252.50688 * 16 15 13 18 18 H 1.08998 * 109.46936 * 60.00015 * 1 2 3 19 19 H 1.08997 * 109.47185 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.46839 * 299.99731 * 1 2 3 21 21 H 1.09008 * 109.46724 * 239.99833 * 2 1 3 22 22 H 1.09000 * 109.47381 * 120.00602 * 2 1 3 23 23 H 1.08997 * 109.46916 * 59.99792 * 3 2 1 24 24 H 1.08998 * 109.46993 * 299.99951 * 3 2 1 25 25 H 0.97004 * 120.00023 * 180.02562 * 8 7 5 26 26 H 1.09008 * 115.54968 * 34.32358 * 15 13 4 27 27 H 1.09006 * 117.50011 * 359.97438 * 16 15 13 28 28 H 1.08999 * 117.50066 * 145.01851 * 16 15 13 29 29 H 1.09001 * 117.49998 * 252.51193 * 17 16 15 30 30 H 1.09001 * 117.52152 * 107.47209 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.5548 -1.1828 6 1 5.1321 1.0426 -1.3118 7 6 3.6725 2.3276 -2.2150 8 7 2.8004 3.2751 -1.9527 9 14 4.2220 2.0251 -3.9744 10 1 3.3261 1.0243 -4.6077 11 1 4.1609 3.2974 -4.7379 12 1 5.6159 1.5130 -3.9766 13 6 4.1794 1.3319 1.1611 14 8 5.3923 1.3323 1.1608 15 6 3.4264 1.2080 2.4606 16 6 3.5015 2.3846 3.4357 17 6 4.2489 1.0859 3.7450 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8933 -0.5139 -0.8901 22 1 1.8934 -0.5139 0.8899 23 1 1.6767 1.9563 0.8900 24 1 1.6768 1.9563 -0.8900 25 1 2.4387 3.8144 -2.6733 26 1 2.4880 0.6555 2.4094 27 1 4.0960 3.2482 3.1375 28 1 2.6126 2.6065 4.0261 29 1 3.8516 0.4533 4.5388 30 1 5.3347 1.0947 3.6499 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044372925.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:03 Heat of formation + Delta-G solvation = -16.191860 kcal Electronic energy + Delta-G solvation = -12910.142237 eV Core-core repulsion = 10706.257615 eV Total energy + Delta-G solvation = -2203.884622 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.84333 -35.88997 -34.77964 -32.68773 -31.11779 -26.13274 -24.98599 -22.68910 -21.89931 -20.82931 -18.40474 -16.93186 -16.35002 -14.92554 -14.49426 -14.26648 -13.75011 -13.43253 -13.24535 -12.46587 -11.80496 -11.63321 -11.38373 -11.25375 -11.06158 -10.96200 -10.62421 -10.30513 -10.23949 -9.96258 -9.90468 -9.79723 -8.89592 -8.35609 -7.44185 -6.29667 -3.90553 3.17926 3.27653 3.32760 3.71577 4.15580 4.55057 4.85943 5.04168 5.38521 5.51285 5.58888 5.64665 5.72271 5.87413 6.02505 6.08175 6.24157 6.31032 6.40562 6.52327 6.56929 6.63250 6.67159 6.97150 7.34423 7.63053 8.29360 8.56646 9.23255 9.47262 10.08856 10.73927 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.032207 B = 0.013503 C = 0.010760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.165484 B = 2073.135774 C = 2601.653066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.103 3.897 4 N -0.438 5.438 5 C -0.307 4.307 6 H 0.092 0.908 7 C 0.035 3.965 8 N -0.869 5.869 9 Si 0.917 3.083 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.484 3.516 14 O -0.585 6.585 15 C -0.175 4.175 16 C -0.159 4.159 17 C -0.161 4.161 18 H 0.054 0.946 19 H 0.046 0.954 20 H 0.049 0.951 21 H 0.063 0.937 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.113 0.887 25 H 0.267 0.733 26 H 0.110 0.890 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.549 -3.436 4.758 8.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C -0.021 4.021 4 N -0.155 5.155 5 C -0.435 4.435 6 H 0.109 0.891 7 C -0.169 4.169 8 N -0.508 5.508 9 Si 0.744 3.256 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.272 3.728 14 O -0.469 6.469 15 C -0.197 4.197 16 C -0.197 4.197 17 C -0.198 4.198 18 H 0.073 0.927 19 H 0.065 0.935 20 H 0.068 0.932 21 H 0.082 0.918 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.131 0.869 25 H 0.077 0.923 26 H 0.128 0.872 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.046 -3.276 4.609 7.579 hybrid contribution -0.050 -0.076 -0.885 0.890 sum -5.097 -3.352 3.723 7.147 Atomic orbital electron populations 1.21675 0.96388 1.00610 1.01555 1.22003 0.94855 0.99476 1.01644 1.21650 0.81987 0.94337 1.04154 1.43421 1.04657 1.62694 1.04745 1.19492 1.06842 1.28181 0.88984 0.89051 1.25323 0.97381 0.93702 1.00485 1.69936 1.31071 1.16903 1.32845 0.86076 0.79453 0.77747 0.82366 1.20336 1.21023 1.19332 1.19453 0.87362 0.81981 0.83963 1.90495 1.14115 1.55598 1.86727 1.22303 1.01661 1.04343 0.91364 1.22793 1.02476 0.92661 1.01778 1.22825 0.99949 0.99868 0.97161 0.92734 0.93495 0.93191 0.91795 0.93184 0.93315 0.86898 0.92283 0.87167 0.88680 0.88900 0.89141 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.14 -2.63 6.04 -26.73 -0.16 -2.79 16 3 C 0.10 2.30 4.59 -4.04 -0.02 2.28 16 4 N -0.44 -11.46 2.56 -114.82 -0.29 -11.76 16 5 C -0.31 -8.74 8.98 -14.93 -0.13 -8.87 16 6 H 0.09 2.73 7.70 -52.49 -0.40 2.32 16 7 C 0.03 0.94 4.92 -17.47 -0.09 0.85 16 8 N -0.87 -23.70 11.33 55.50 0.63 -23.08 16 9 Si 0.92 20.87 29.61 -169.99 -5.03 15.84 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 C 0.48 12.44 7.37 -10.98 -0.08 12.36 16 14 O -0.59 -17.10 16.08 5.54 0.09 -17.01 16 15 C -0.18 -3.48 4.77 -91.77 -0.44 -3.91 16 16 C -0.16 -2.74 10.23 -26.73 -0.27 -3.01 16 17 C -0.16 -2.74 10.04 -26.73 -0.27 -3.01 16 18 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 19 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 22 H 0.05 0.89 6.84 -51.93 -0.36 0.54 16 23 H 0.05 1.02 6.96 -51.93 -0.36 0.66 16 24 H 0.11 2.77 5.34 -51.93 -0.28 2.49 16 25 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 26 H 0.11 1.96 6.00 -51.92 -0.31 1.65 16 27 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 28 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.10 1.92 7.67 -51.93 -0.40 1.52 16 LS Contribution 253.57 15.07 3.82 3.82 Total: -1.00 -31.07 253.57 -6.08 -37.15 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -4.20 Total: 2.93 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -1.09 Total: -7.90 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.34 Total: -34.83 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: 0.09 Total: -17.01 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.07 -6.08 -37.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044372925.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.955 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds