Wall clock time and date at job start Mon Mar 30 2020 02:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47542 * 2 1 4 4 N 1.46499 * 109.47263 * 180.02562 * 3 2 1 5 5 C 1.37095 * 120.00665 * 95.42783 * 4 3 2 6 6 H 1.07997 * 120.00164 * 213.93375 * 5 4 3 7 7 C 1.38952 * 120.00018 * 33.91957 * 5 4 3 8 8 N 1.31414 * 119.99555 * 22.16948 * 7 5 4 9 9 Si 1.86791 * 120.00369 * 201.88702 * 7 5 4 10 10 H 1.48508 * 109.46962 * 90.00193 * 9 7 5 11 11 H 1.48497 * 109.47382 * 210.00272 * 9 7 5 12 12 H 1.48498 * 109.47187 * 330.00648 * 9 7 5 13 13 C 1.34780 * 119.99656 * 275.41835 * 4 3 2 14 14 O 1.21296 * 120.00231 * 180.02562 * 13 4 3 15 15 C 1.50700 * 120.00136 * 0.02562 * 13 4 3 16 16 C 1.52997 * 117.49925 * 248.62088 * 15 13 4 17 17 C 1.52999 * 60.00199 * 252.50688 * 16 15 13 18 18 H 1.08998 * 109.46936 * 60.00015 * 1 2 3 19 19 H 1.08997 * 109.47185 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.46839 * 299.99731 * 1 2 3 21 21 H 1.09008 * 109.46724 * 239.99833 * 2 1 3 22 22 H 1.09000 * 109.47381 * 120.00602 * 2 1 3 23 23 H 1.08997 * 109.46916 * 59.99792 * 3 2 1 24 24 H 1.08998 * 109.46993 * 299.99951 * 3 2 1 25 25 H 0.97004 * 120.00023 * 180.02562 * 8 7 5 26 26 H 1.09008 * 115.54968 * 34.32358 * 15 13 4 27 27 H 1.09006 * 117.50011 * 359.97438 * 16 15 13 28 28 H 1.08999 * 117.50066 * 145.01851 * 16 15 13 29 29 H 1.09001 * 117.49998 * 252.51193 * 17 16 15 30 30 H 1.09001 * 117.52152 * 107.47209 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.5548 -1.1828 6 1 5.1321 1.0426 -1.3118 7 6 3.6725 2.3276 -2.2150 8 7 2.8004 3.2751 -1.9527 9 14 4.2220 2.0251 -3.9744 10 1 3.3261 1.0243 -4.6077 11 1 4.1609 3.2974 -4.7379 12 1 5.6159 1.5130 -3.9766 13 6 4.1794 1.3319 1.1611 14 8 5.3923 1.3323 1.1608 15 6 3.4264 1.2080 2.4606 16 6 3.5015 2.3846 3.4357 17 6 4.2489 1.0859 3.7450 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8933 -0.5139 -0.8901 22 1 1.8934 -0.5139 0.8899 23 1 1.6767 1.9563 0.8900 24 1 1.6768 1.9563 -0.8900 25 1 2.4387 3.8144 -2.6733 26 1 2.4880 0.6555 2.4094 27 1 4.0960 3.2482 3.1375 28 1 2.6126 2.6065 4.0261 29 1 3.8516 0.4533 4.5388 30 1 5.3347 1.0947 3.6499 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044372925.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:02 Heat of formation + Delta-G solvation = -35.494549 kcal Electronic energy + Delta-G solvation = -12910.979265 eV Core-core repulsion = 10706.257615 eV Total energy + Delta-G solvation = -2204.721649 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.70033 -37.58339 -36.58424 -34.48755 -32.99704 -28.02289 -26.68584 -24.44953 -23.25162 -22.37500 -20.22652 -18.89467 -18.16163 -16.90481 -16.22205 -15.90142 -15.38591 -15.16753 -14.95452 -14.00051 -13.57119 -13.36779 -13.13572 -12.99387 -12.61314 -12.38498 -12.27924 -12.07311 -11.98759 -11.57653 -11.35422 -11.33426 -10.86127 -10.37192 -9.47562 -8.36272 -6.06336 1.34723 1.39073 1.51239 1.90466 2.27148 2.86096 3.03837 3.20028 3.90806 3.99504 4.14783 4.19013 4.29635 4.43796 4.63124 4.74148 4.75533 4.94986 4.98785 5.09229 5.16876 5.29567 5.30412 5.40361 5.46474 5.61905 6.18701 6.53235 7.16274 7.47480 8.07903 8.65798 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.032207 B = 0.013503 C = 0.010760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.165484 B = 2073.135774 C = 2601.653066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.133 4.133 3 C 0.104 3.896 4 N -0.450 5.450 5 C -0.348 4.348 6 H 0.061 0.939 7 C 0.004 3.996 8 N -0.886 5.886 9 Si 0.981 3.019 10 H -0.261 1.261 11 H -0.273 1.273 12 H -0.276 1.276 13 C 0.465 3.535 14 O -0.639 6.639 15 C -0.195 4.195 16 C -0.145 4.145 17 C -0.145 4.145 18 H 0.049 0.951 19 H 0.070 0.930 20 H 0.067 0.933 21 H 0.042 0.958 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.090 0.910 25 H 0.275 0.725 26 H 0.137 0.863 27 H 0.070 0.930 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.553 -3.860 5.476 10.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C -0.019 4.019 4 N -0.167 5.167 5 C -0.476 4.476 6 H 0.078 0.922 7 C -0.198 4.198 8 N -0.524 5.524 9 Si 0.804 3.196 10 H -0.186 1.186 11 H -0.198 1.198 12 H -0.201 1.201 13 C 0.255 3.745 14 O -0.527 6.527 15 C -0.216 4.216 16 C -0.183 4.183 17 C -0.182 4.182 18 H 0.068 0.932 19 H 0.089 0.911 20 H 0.086 0.914 21 H 0.061 0.939 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.108 0.892 25 H 0.085 0.915 26 H 0.154 0.846 27 H 0.089 0.911 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.099 -3.696 5.331 9.617 hybrid contribution 0.598 0.106 -1.095 1.252 sum -6.501 -3.590 4.236 8.550 Atomic orbital electron populations 1.21626 0.93090 1.02448 1.02243 1.21899 0.97565 0.96552 1.01106 1.21741 0.79770 0.96783 1.03592 1.43727 1.06230 1.62240 1.04453 1.19421 1.07057 1.29844 0.91238 0.92155 1.26072 0.97130 0.92805 1.03827 1.69995 1.31232 1.16847 1.34288 0.85130 0.78768 0.78254 0.77399 1.18555 1.19836 1.20138 1.20496 0.87284 0.80841 0.85869 1.90440 1.16559 1.57902 1.87815 1.22219 1.02718 1.07529 0.89117 1.22936 1.03684 0.91355 1.00298 1.22945 0.98534 1.00386 0.96337 0.93227 0.91086 0.91355 0.93902 0.92204 0.91835 0.89224 0.91550 0.84559 0.91102 0.84501 0.84638 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.91 71.98 0.71 -2.96 16 2 C -0.13 -4.77 6.04 30.59 0.18 -4.58 16 3 C 0.10 4.63 4.59 86.38 0.40 5.02 16 4 N -0.45 -24.18 2.56 -635.55 -1.63 -25.81 16 5 C -0.35 -20.58 8.98 84.04 0.75 -19.83 16 6 H 0.06 3.85 7.70 -2.91 -0.02 3.83 16 7 C 0.00 0.23 4.92 84.93 0.42 0.65 16 8 N -0.89 -48.58 11.33 21.66 0.25 -48.33 16 9 Si 0.98 43.21 29.61 68.60 2.03 45.24 16 10 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 13 C 0.46 24.50 7.37 87.66 0.65 25.14 16 14 O -0.64 -39.20 16.08 -3.08 -0.05 -39.25 16 15 C -0.19 -7.44 4.77 -11.54 -0.06 -7.49 16 16 C -0.15 -4.64 10.23 30.59 0.31 -4.33 16 17 C -0.14 -4.62 10.04 30.59 0.31 -4.31 16 18 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 19 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 20 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 21 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 22 H 0.06 2.02 6.84 -2.39 -0.02 2.00 16 23 H 0.06 2.57 6.96 -2.39 -0.02 2.55 16 24 H 0.09 4.42 5.34 -2.39 -0.01 4.40 16 25 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 26 H 0.14 4.43 6.00 -2.38 -0.01 4.41 16 27 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 28 H 0.14 3.19 8.14 -2.39 -0.02 3.17 16 29 H 0.14 3.11 8.14 -2.39 -0.02 3.09 16 30 H 0.08 2.87 7.67 -2.39 -0.02 2.85 16 Total: -1.00 -70.54 253.57 5.39 -65.15 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 1.11 Total: 15.69 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 3.68 Total: -12.68 kcal Atomic # 7 Polarization: -72.76 SS G_CDS: -1.38 Total: -74.14 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -0.05 Total: -39.25 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -70.54 5.39 -65.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044372925.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.657 kcal (2) G-P(sol) polarization free energy of solvation -70.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds