Wall clock time and date at job start Mon Mar 30 2020 02:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47236 * 2 1 4 4 C 1.50698 * 109.46891 * 120.00204 * 2 1 3 5 5 H 1.08003 * 120.00308 * 119.99506 * 4 2 1 6 6 C 1.37876 * 120.00151 * 300.00098 * 4 2 1 7 7 N 1.31513 * 119.99891 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00081 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47084 * 59.99840 * 8 6 4 10 10 H 1.48503 * 109.47001 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46684 * 299.99462 * 8 6 4 12 12 C 1.50699 * 109.46906 * 240.00027 * 2 1 3 13 13 O 1.21286 * 119.99986 * 240.00328 * 12 2 1 14 14 N 1.34775 * 120.00328 * 60.00412 * 12 2 1 15 15 C 1.47018 * 125.65103 * 179.97438 * 14 12 2 16 16 C 1.54325 * 107.40412 * 180.94532 * 15 14 12 17 17 C 1.55552 * 102.75696 * 22.23822 * 16 15 14 18 18 C 1.47430 * 125.64364 * 359.95398 * 14 12 2 19 19 H 1.09001 * 109.47729 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47517 * 299.99878 * 1 2 3 21 21 H 1.08999 * 109.47037 * 59.99896 * 1 2 3 22 22 H 0.96999 * 120.00000 * 179.97438 * 7 6 4 23 23 H 1.09002 * 109.88241 * 300.44061 * 15 14 12 24 24 H 1.09000 * 109.88049 * 61.45190 * 15 14 12 25 25 H 1.08993 * 110.72531 * 140.63023 * 16 15 14 26 26 H 1.09000 * 110.72094 * 263.91129 * 16 15 14 27 27 H 1.08997 * 110.96565 * 206.40316 * 17 16 15 28 28 H 1.09000 * 111.02984 * 82.56372 * 17 16 15 29 29 H 1.08997 * 110.36526 * 274.74791 * 18 14 12 30 30 H 1.08992 * 110.36633 * 36.96256 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1314 6 6 1.6991 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3224 -1.1198 4.0080 9 1 3.8074 -1.1192 4.0078 10 1 1.8277 -0.4195 5.2205 11 1 1.8278 -2.5200 4.0081 12 6 2.0323 -0.7104 -1.2305 13 8 2.7295 -1.6966 -1.1192 14 7 1.7068 -0.2499 -2.4546 15 6 2.1266 -0.8429 -3.7327 16 6 1.5390 0.0300 -4.8616 17 6 1.2937 1.3916 -4.1507 18 6 0.8703 0.9316 -2.7336 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 0.7088 1.1612 3.4844 23 1 3.2146 -0.8505 -3.7982 24 1 1.7434 -1.8601 -3.8131 25 1 2.2552 0.1413 -5.6757 26 1 0.6016 -0.3903 -5.2259 27 1 0.4918 1.9468 -4.6373 28 1 2.2085 1.9831 -4.1120 29 1 -0.1853 0.6601 -2.7227 30 1 1.0669 1.7165 -2.0035 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049804858.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:06 Heat of formation + Delta-G solvation = -64.287378 kcal Electronic energy + Delta-G solvation = -12855.377593 eV Core-core repulsion = 10649.407393 eV Total energy + Delta-G solvation = -2205.970200 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.92279 -38.21440 -35.84716 -33.15875 -31.70724 -29.77737 -27.22950 -25.50887 -23.13022 -21.95330 -20.22338 -18.41834 -17.60421 -17.23142 -16.78118 -16.02282 -15.11923 -14.57219 -14.44992 -14.29575 -14.03438 -13.40833 -13.15378 -12.93371 -12.72467 -12.53161 -12.24603 -12.15816 -12.01902 -11.92038 -11.54448 -11.05261 -10.63686 -10.34017 -9.55076 -8.17374 -6.28463 1.39018 1.41169 1.49773 1.85798 2.20476 2.45652 3.11455 3.67114 3.74481 4.10465 4.28270 4.34419 4.51049 4.68986 4.75973 4.90484 4.92516 4.95586 5.03722 5.06462 5.13563 5.36364 5.44487 5.56644 5.70591 5.93729 6.19089 6.63593 6.80483 7.36366 7.45677 8.88521 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.066347 B = 0.009600 C = 0.008731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.919607 B = 2915.928933 C = 3206.136675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.032 3.968 3 H 0.038 0.962 4 C -0.535 4.535 5 H 0.046 0.954 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.958 3.042 9 H -0.276 1.276 10 H -0.270 1.270 11 H -0.276 1.276 12 C 0.528 3.472 13 O -0.595 6.595 14 N -0.629 5.629 15 C 0.093 3.907 16 C -0.115 4.115 17 C -0.123 4.123 18 C 0.090 3.910 19 H 0.017 0.983 20 H 0.072 0.928 21 H 0.059 0.941 22 H 0.266 0.734 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.103 0.897 26 H 0.091 0.909 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.740 3.530 -13.236 13.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.011 3.989 3 H 0.055 0.945 4 C -0.573 4.573 5 H 0.064 0.936 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.783 3.217 9 H -0.202 1.202 10 H -0.195 1.195 11 H -0.202 1.202 12 C 0.319 3.681 13 O -0.475 6.475 14 N -0.364 5.364 15 C -0.030 4.030 16 C -0.153 4.153 17 C -0.161 4.161 18 C -0.032 4.032 19 H 0.036 0.964 20 H 0.091 0.909 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.122 0.878 26 H 0.110 0.890 27 H 0.133 0.867 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.440 3.106 -12.969 13.557 hybrid contribution 0.486 -0.637 1.145 1.398 sum -1.954 2.469 -11.823 12.235 Atomic orbital electron populations 1.21671 0.94965 0.99257 1.02159 1.18720 0.95491 0.95530 0.89159 0.94472 1.21265 1.31920 1.12860 0.91270 0.93614 1.25616 0.95108 0.95767 1.01408 1.69937 1.37002 1.23439 1.24491 0.85625 0.78661 0.78724 0.78706 1.20196 1.19502 1.20175 1.21461 0.78282 0.83636 0.84704 1.90488 1.40746 1.29161 1.87131 1.48765 1.52033 1.30703 1.04907 1.22091 0.99257 0.97812 0.83798 1.22697 1.02584 0.94195 0.95792 1.22888 1.03330 0.97182 0.92657 1.22658 0.94989 0.86804 0.98726 0.96365 0.90928 0.92266 0.92438 0.93131 0.93043 0.87837 0.89028 0.86664 0.90590 0.90309 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 8.78 71.98 0.63 -5.22 16 2 C 0.03 1.71 1.99 -12.29 -0.02 1.68 16 3 H 0.04 2.06 7.85 -2.39 -0.02 2.04 16 4 C -0.53 -32.42 8.37 25.60 0.21 -32.20 16 5 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 6 C 0.02 1.17 5.30 84.65 0.45 1.62 16 7 N -0.91 -52.06 11.32 21.45 0.24 -51.82 16 8 Si 0.96 45.99 29.54 68.60 2.03 48.01 16 9 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 C 0.53 26.57 7.21 87.66 0.63 27.20 16 13 O -0.59 -34.57 15.79 -3.05 -0.05 -34.61 16 14 N -0.63 -23.90 3.32 -811.84 -2.70 -26.60 16 15 C 0.09 2.81 6.86 86.73 0.59 3.41 16 16 C -0.12 -2.11 6.98 31.92 0.22 -1.89 16 17 C -0.12 -2.28 7.09 32.12 0.23 -2.05 16 18 C 0.09 2.54 5.14 86.85 0.45 2.99 16 19 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 20 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 21 H 0.06 2.29 4.99 -2.39 -0.01 2.28 16 22 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 23 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 2.04 7.07 -2.39 -0.02 2.03 16 30 H 0.07 2.13 7.35 -2.39 -0.02 2.11 16 Total: -1.00 -71.60 244.39 4.03 -67.56 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: 1.11 Total: 1.92 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 3.39 Total: -4.47 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -2.45 Total: -78.42 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.05 Total: -34.61 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -71.60 4.03 -67.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049804858.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.277 kcal (2) G-P(sol) polarization free energy of solvation -71.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds