Wall clock time and date at job start Mon Mar 30 2020 02:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46564 * 2 1 4 4 C 1.50706 * 109.47054 * 240.00675 * 2 1 3 5 5 H 1.07997 * 119.99480 * 239.99751 * 4 2 1 6 6 C 1.37870 * 120.00070 * 59.99706 * 4 2 1 7 7 N 1.31516 * 120.00148 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99892 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47052 * 90.00162 * 8 6 4 10 10 H 1.48496 * 109.47139 * 209.99698 * 8 6 4 11 11 H 1.48497 * 109.47343 * 330.00048 * 8 6 4 12 12 C 1.50702 * 109.47376 * 120.00340 * 2 1 3 13 13 O 1.21274 * 119.99670 * 83.19714 * 12 2 1 14 14 N 1.34776 * 119.99515 * 263.19837 * 12 2 1 15 15 C 1.47016 * 125.65281 * 4.77538 * 14 12 2 16 16 C 1.54319 * 107.27734 * 180.97098 * 15 14 12 17 17 C 1.55160 * 102.86162 * 22.52251 * 16 15 14 18 18 C 1.47424 * 125.64122 * 185.08375 * 14 12 2 19 19 H 1.08999 * 109.46849 * 174.62604 * 1 2 3 20 20 H 1.08997 * 109.47166 * 294.62092 * 1 2 3 21 21 H 1.08994 * 109.47370 * 54.62386 * 1 2 3 22 22 H 0.97003 * 120.00008 * 180.02562 * 7 6 4 23 23 H 1.09005 * 109.87949 * 300.51260 * 15 14 12 24 24 H 1.08997 * 109.88547 * 61.67776 * 15 14 12 25 25 H 1.09003 * 110.92068 * 264.11407 * 16 15 14 26 26 H 1.08993 * 110.59397 * 140.78406 * 16 15 14 27 27 H 1.08997 * 111.00617 * 206.22944 * 17 16 15 28 28 H 1.09001 * 111.03469 * 82.39590 * 17 16 15 29 29 H 1.09003 * 110.37207 * 274.67257 * 18 14 12 30 30 H 1.09003 * 110.37091 * 36.88522 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8304 -2.6033 8 14 2.3225 -1.1192 -4.0080 9 1 1.3448 -2.1612 -4.4126 10 1 2.4871 -0.1398 -5.1120 11 1 3.6309 -1.7562 -3.7122 12 6 2.0324 -0.7105 1.2304 13 8 2.1172 -1.9202 1.2399 14 7 2.3874 -0.0014 2.3202 15 6 2.2427 1.4528 2.4809 16 6 2.8019 1.8181 3.8720 17 6 3.7540 0.6332 4.1835 18 6 2.9909 -0.5548 3.5461 19 1 -0.3633 -1.0231 -0.0962 20 1 -0.3633 0.4281 0.9342 21 1 -0.3634 0.5949 -0.8379 22 1 0.7088 1.1617 -3.4843 23 1 2.8075 1.9695 1.7049 24 1 1.1900 1.7294 2.4224 25 1 2.0022 1.8746 4.6104 26 1 3.3552 2.7562 3.8285 27 1 3.8657 0.4940 5.2588 28 1 4.7241 0.7751 3.7073 29 1 2.2151 -0.9139 4.2223 30 1 3.6806 -1.3617 3.2986 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049804859.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:09 Heat of formation + Delta-G solvation = -46.634013 kcal Electronic energy + Delta-G solvation = -12815.641408 eV Core-core repulsion = 10610.436716 eV Total energy + Delta-G solvation = -2205.204693 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.23994 -36.69554 -33.69445 -31.29030 -30.09368 -28.59345 -25.16555 -23.79328 -21.58797 -20.77996 -18.41636 -16.32205 -16.26681 -15.75996 -14.74832 -13.93483 -13.65564 -13.25026 -13.02598 -12.57012 -12.14921 -12.03516 -11.39042 -11.14303 -11.01962 -10.95226 -10.69529 -10.62965 -10.56506 -10.21402 -10.03488 -8.97984 -8.57246 -8.30907 -7.96438 -6.02780 -4.06187 3.34141 3.39498 3.44876 3.74981 3.77609 4.47432 4.74285 4.84391 5.05080 5.30482 5.50959 5.57760 5.81127 5.87377 5.92159 6.09493 6.19017 6.24633 6.31484 6.71440 6.91358 6.99448 7.04825 7.52453 7.78396 8.00393 8.17757 8.44727 8.97529 9.26286 9.58177 11.04904 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.054048 B = 0.009697 C = 0.009260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.930182 B = 2886.799111 C = 3023.156575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.035 3.965 3 H 0.044 0.956 4 C -0.500 4.500 5 H 0.065 0.935 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.538 3.462 13 O -0.551 6.551 14 N -0.634 5.634 15 C 0.106 3.894 16 C -0.132 4.132 17 C -0.133 4.133 18 C 0.103 3.897 19 H 0.036 0.964 20 H 0.009 0.991 21 H 0.090 0.910 22 H 0.261 0.739 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.752 4.035 10.728 11.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.014 3.986 3 H 0.062 0.938 4 C -0.538 4.538 5 H 0.084 0.916 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.330 3.670 13 O -0.427 6.427 14 N -0.371 5.371 15 C -0.018 4.018 16 C -0.170 4.170 17 C -0.171 4.171 18 C -0.020 4.020 19 H 0.055 0.945 20 H 0.028 0.972 21 H 0.109 0.891 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.686 3.435 10.494 11.364 hybrid contribution 0.272 -0.337 -0.777 0.889 sum 2.958 3.099 9.717 10.619 Atomic orbital electron populations 1.21653 0.96143 1.00935 0.99635 1.18866 0.94295 0.96533 0.88891 0.93765 1.21009 1.31346 1.12330 0.89165 0.91650 1.24929 0.95086 0.95029 0.99027 1.69887 1.36959 1.22934 1.23556 0.86445 0.79412 0.79279 0.82035 1.20549 1.21221 1.19826 1.21813 0.74737 0.87515 0.82917 1.90529 1.54435 1.14933 1.82805 1.48852 1.64466 1.07886 1.15902 1.21913 1.01011 0.82046 0.96829 1.22642 0.99119 0.98587 0.96620 1.22770 0.98791 0.94986 1.00599 1.22073 0.96441 0.96479 0.87018 0.94486 0.97211 0.89108 0.92910 0.91253 0.91692 0.90935 0.90375 0.90482 0.90792 0.92521 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.87 37.16 0.33 -2.80 16 2 C 0.04 0.92 2.30 -92.92 -0.21 0.71 16 3 H 0.04 1.16 6.85 -51.93 -0.36 0.80 16 4 C -0.50 -14.57 8.32 -34.44 -0.29 -14.86 16 5 H 0.07 2.00 7.30 -52.49 -0.38 1.61 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.44 11.38 55.43 0.63 -24.81 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.54 13.28 6.81 -10.98 -0.07 13.20 16 13 O -0.55 -15.32 16.47 5.56 0.09 -15.23 16 14 N -0.63 -12.42 3.33 -170.52 -0.57 -12.98 16 15 C 0.11 1.66 6.17 -3.07 -0.02 1.64 16 16 C -0.13 -1.50 6.95 -24.90 -0.17 -1.67 16 17 C -0.13 -1.56 7.08 -24.58 -0.17 -1.73 16 18 C 0.10 1.64 6.89 -2.53 -0.02 1.62 16 19 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 20 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 21 H 0.09 2.39 6.23 -51.93 -0.32 2.06 16 22 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 23 H 0.07 1.12 7.63 -51.93 -0.40 0.72 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 LS Contribution 250.27 15.07 3.77 3.77 Total: -1.00 -32.05 250.27 -6.21 -38.26 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -4.40 Total: -3.75 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -0.72 Total: -2.28 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.06 Total: -37.79 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.09 Total: -15.23 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.05 -6.21 -38.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049804859.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.371 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds