Wall clock time and date at job start Mon Mar 30 2020 02:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46564 * 2 1 4 4 C 1.50706 * 109.47054 * 240.00675 * 2 1 3 5 5 H 1.07997 * 119.99480 * 239.99751 * 4 2 1 6 6 C 1.37870 * 120.00070 * 59.99706 * 4 2 1 7 7 N 1.31516 * 120.00148 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99892 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47052 * 90.00162 * 8 6 4 10 10 H 1.48496 * 109.47139 * 209.99698 * 8 6 4 11 11 H 1.48497 * 109.47343 * 330.00048 * 8 6 4 12 12 C 1.50702 * 109.47376 * 120.00340 * 2 1 3 13 13 O 1.21274 * 119.99670 * 83.19714 * 12 2 1 14 14 N 1.34776 * 119.99515 * 263.19837 * 12 2 1 15 15 C 1.47016 * 125.65281 * 4.77538 * 14 12 2 16 16 C 1.54319 * 107.27734 * 180.97098 * 15 14 12 17 17 C 1.55160 * 102.86162 * 22.52251 * 16 15 14 18 18 C 1.47424 * 125.64122 * 185.08375 * 14 12 2 19 19 H 1.08999 * 109.46849 * 174.62604 * 1 2 3 20 20 H 1.08997 * 109.47166 * 294.62092 * 1 2 3 21 21 H 1.08994 * 109.47370 * 54.62386 * 1 2 3 22 22 H 0.97003 * 120.00008 * 180.02562 * 7 6 4 23 23 H 1.09005 * 109.87949 * 300.51260 * 15 14 12 24 24 H 1.08997 * 109.88547 * 61.67776 * 15 14 12 25 25 H 1.09003 * 110.92068 * 264.11407 * 16 15 14 26 26 H 1.08993 * 110.59397 * 140.78406 * 16 15 14 27 27 H 1.08997 * 111.00617 * 206.22944 * 17 16 15 28 28 H 1.09001 * 111.03469 * 82.39590 * 17 16 15 29 29 H 1.09003 * 110.37207 * 274.67257 * 18 14 12 30 30 H 1.09003 * 110.37091 * 36.88522 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8304 -2.6033 8 14 2.3225 -1.1192 -4.0080 9 1 1.3448 -2.1612 -4.4126 10 1 2.4871 -0.1398 -5.1120 11 1 3.6309 -1.7562 -3.7122 12 6 2.0324 -0.7105 1.2304 13 8 2.1172 -1.9202 1.2399 14 7 2.3874 -0.0014 2.3202 15 6 2.2427 1.4528 2.4809 16 6 2.8019 1.8181 3.8720 17 6 3.7540 0.6332 4.1835 18 6 2.9909 -0.5548 3.5461 19 1 -0.3633 -1.0231 -0.0962 20 1 -0.3633 0.4281 0.9342 21 1 -0.3634 0.5949 -0.8379 22 1 0.7088 1.1617 -3.4843 23 1 2.8075 1.9695 1.7049 24 1 1.1900 1.7294 2.4224 25 1 2.0022 1.8746 4.6104 26 1 3.3552 2.7562 3.8285 27 1 3.8657 0.4940 5.2588 28 1 4.7241 0.7751 3.7073 29 1 2.2151 -0.9139 4.2223 30 1 3.6806 -1.3617 3.2986 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049804859.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:08 Heat of formation + Delta-G solvation = -67.741836 kcal Electronic energy + Delta-G solvation = -12816.556712 eV Core-core repulsion = 10610.436716 eV Total energy + Delta-G solvation = -2206.119997 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.88830 -38.26468 -35.81405 -33.02614 -31.82539 -29.83815 -27.32951 -25.45004 -23.23409 -21.92873 -20.08896 -18.39163 -17.94627 -17.25363 -16.72686 -15.70063 -15.29316 -14.70408 -14.46778 -14.13324 -13.80598 -13.63485 -13.15730 -12.96368 -12.67741 -12.64798 -12.34098 -12.15045 -12.08956 -12.05360 -11.55412 -11.11324 -10.64485 -10.35926 -9.54784 -8.19512 -6.31152 1.38655 1.40028 1.50894 1.84850 2.20952 2.44458 3.09606 3.65281 3.74783 4.10718 4.26192 4.35373 4.52233 4.67760 4.73153 4.86741 4.92881 4.95805 4.97953 5.05594 5.14406 5.33137 5.39043 5.56248 5.68045 5.86198 6.13557 6.62878 6.74328 7.32787 7.43662 8.86911 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.054048 B = 0.009697 C = 0.009260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.930182 B = 2886.799111 C = 3023.156575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.032 3.968 3 H 0.040 0.960 4 C -0.532 4.532 5 H 0.039 0.961 6 C 0.022 3.978 7 N -0.908 5.908 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.270 1.270 11 H -0.277 1.277 12 C 0.532 3.468 13 O -0.596 6.596 14 N -0.632 5.632 15 C 0.092 3.908 16 C -0.117 4.117 17 C -0.120 4.120 18 C 0.091 3.909 19 H 0.018 0.982 20 H 0.038 0.962 21 H 0.075 0.925 22 H 0.267 0.733 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.166 5.294 11.897 13.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.011 3.989 3 H 0.058 0.942 4 C -0.570 4.570 5 H 0.058 0.942 6 C -0.178 4.178 7 N -0.547 5.547 8 Si 0.784 3.216 9 H -0.201 1.201 10 H -0.194 1.194 11 H -0.202 1.202 12 C 0.324 3.676 13 O -0.477 6.477 14 N -0.367 5.367 15 C -0.031 4.031 16 C -0.155 4.155 17 C -0.158 4.158 18 C -0.031 4.031 19 H 0.038 0.962 20 H 0.057 0.943 21 H 0.094 0.906 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.112 0.888 26 H 0.123 0.877 27 H 0.132 0.868 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.105 4.752 11.705 13.008 hybrid contribution 0.140 -0.680 -1.091 1.293 sum 3.245 4.072 10.613 11.822 Atomic orbital electron populations 1.21471 0.95470 0.99658 1.00492 1.18785 0.94916 0.95975 0.89208 0.94176 1.21129 1.32318 1.12344 0.91235 0.94245 1.25616 0.95030 0.95690 1.01427 1.69951 1.36829 1.23334 1.24561 0.85542 0.78633 0.78547 0.78854 1.20094 1.19431 1.20163 1.21438 0.75181 0.86979 0.84038 1.90488 1.56755 1.16578 1.83894 1.48818 1.62612 1.09716 1.15558 1.22257 1.01562 0.79442 0.99794 1.22660 0.99680 0.99372 0.93752 1.22775 0.98034 0.92611 1.02337 1.22408 0.96876 0.98052 0.85758 0.96231 0.94289 0.90590 0.92335 0.92121 0.91464 0.88820 0.87681 0.86826 0.90797 0.91328 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.68 8.87 71.98 0.64 -5.05 16 2 C 0.03 1.73 2.30 -12.28 -0.03 1.70 16 3 H 0.04 2.14 6.85 -2.38 -0.02 2.13 16 4 C -0.53 -31.92 8.32 25.60 0.21 -31.71 16 5 H 0.04 2.51 7.30 -2.91 -0.02 2.49 16 6 C 0.02 1.26 5.30 84.65 0.45 1.71 16 7 N -0.91 -51.69 11.38 21.45 0.24 -51.45 16 8 Si 0.96 45.41 29.54 68.60 2.03 47.44 16 9 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 C 0.53 26.87 6.81 87.66 0.60 27.47 16 13 O -0.60 -34.44 16.47 -3.01 -0.05 -34.49 16 14 N -0.63 -24.48 3.33 -811.81 -2.70 -27.19 16 15 C 0.09 2.72 6.17 86.73 0.54 3.25 16 16 C -0.12 -2.18 6.95 31.78 0.22 -1.96 16 17 C -0.12 -2.36 7.08 31.99 0.23 -2.13 16 18 C 0.09 2.77 6.89 86.86 0.60 3.37 16 19 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 20 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 21 H 0.08 4.03 6.23 -2.39 -0.01 4.02 16 22 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 23 H 0.06 1.90 7.63 -2.38 -0.02 1.88 16 24 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.05 1.77 8.09 -2.39 -0.02 1.75 16 Total: -1.00 -70.83 250.27 4.07 -66.75 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: 1.10 Total: 2.27 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 3.45 Total: -3.34 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -2.46 Total: -78.63 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.05 Total: -34.49 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -70.83 4.07 -66.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049804859.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.989 kcal (2) G-P(sol) polarization free energy of solvation -70.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds